miRNA display CGI


Results 61 - 80 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 23665 0.79 0.181158
Target:  5'- gCCGACCaggGUCGCGGCcggUCGGGCggGCCg -3'
miRNA:   3'- -GGUUGGa--CAGCGUCG---AGCUUGagCGG- -5'
26328 5' -53.7 NC_005345.2 + 23923 0.66 0.779223
Target:  5'- aCgAGCC-GUCGUgcgugAGCUCGcACUCGgCa -3'
miRNA:   3'- -GgUUGGaCAGCG-----UCGAGCuUGAGCgG- -5'
26328 5' -53.7 NC_005345.2 + 23962 0.67 0.748373
Target:  5'- aCCGcggGCugCUGUCGCGGCcgCGAggcuggggcaAgUCGCCg -3'
miRNA:   3'- -GGU---UG--GACAGCGUCGa-GCU----------UgAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 24756 0.66 0.789212
Target:  5'- gCguGgCUGUCGCAGCcCGAaguGCgggCGUCg -3'
miRNA:   3'- -GguUgGACAGCGUCGaGCU---UGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 24817 0.66 0.799034
Target:  5'- gCGACCgGaUCGUgcucgGGUUCGAcgGCUCGCg -3'
miRNA:   3'- gGUUGGaC-AGCG-----UCGAGCU--UGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 24924 0.67 0.737833
Target:  5'- cUCGGCgUGUgggaGCAGCcgccgcgaUCGAACUCgGCCc -3'
miRNA:   3'- -GGUUGgACAg---CGUCG--------AGCUUGAG-CGG- -5'
26328 5' -53.7 NC_005345.2 + 24970 0.68 0.69471
Target:  5'- gCGGCCgGUCGaguGGCaagugcccgucgUCGAgguGCUCGCCg -3'
miRNA:   3'- gGUUGGaCAGCg--UCG------------AGCU---UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 25220 0.7 0.543698
Target:  5'- gCCGGCCgGUCaccggguGCAGCUCguagaaccgcagcagGAACUCgGCCu -3'
miRNA:   3'- -GGUUGGaCAG-------CGUCGAG---------------CUUGAG-CGG- -5'
26328 5' -53.7 NC_005345.2 + 25361 0.66 0.799034
Target:  5'- gCCGuCCUGgCGUggcagugccGGCUCGAcgcgaUCGCCg -3'
miRNA:   3'- -GGUuGGACaGCG---------UCGAGCUug---AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 25573 0.74 0.337986
Target:  5'- gCGACCcgcaGcCGCAGCUCGGACgcgGCCg -3'
miRNA:   3'- gGUUGGa---CaGCGUCGAGCUUGag-CGG- -5'
26328 5' -53.7 NC_005345.2 + 26056 0.66 0.769079
Target:  5'- cUCGGCgaG-CGCcuGCUCGAACUgGCUc -3'
miRNA:   3'- -GGUUGgaCaGCGu-CGAGCUUGAgCGG- -5'
26328 5' -53.7 NC_005345.2 + 26109 0.66 0.789212
Target:  5'- aCGACCUcGgcgggaUGCAGCuggUCGAGUUCGCCc -3'
miRNA:   3'- gGUUGGA-Ca-----GCGUCG---AGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 26408 0.73 0.408529
Target:  5'- aCCGACCUGUCGgGGUUCcugaaaGAGCaCGCg -3'
miRNA:   3'- -GGUUGGACAGCgUCGAG------CUUGaGCGg -5'
26328 5' -53.7 NC_005345.2 + 26495 0.68 0.655033
Target:  5'- cCCGACC-GUcCGCAGgUCGAccccuugcacccggcACgagCGCCg -3'
miRNA:   3'- -GGUUGGaCA-GCGUCgAGCU---------------UGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 26588 0.67 0.758792
Target:  5'- -gGGCUcGaaUCGguGCUCGcGCUCGCUg -3'
miRNA:   3'- ggUUGGaC--AGCguCGAGCuUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 26751 0.67 0.758792
Target:  5'- aCCGGCCcGUCccguaCAGCUCGAccgaGCCg -3'
miRNA:   3'- -GGUUGGaCAGc----GUCGAGCUugagCGG- -5'
26328 5' -53.7 NC_005345.2 + 26795 0.7 0.562167
Target:  5'- gCCGgcGCCgcGUCGCAGg-CGcuGCUCGCCg -3'
miRNA:   3'- -GGU--UGGa-CAGCGUCgaGCu-UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 26991 0.66 0.799033
Target:  5'- gCCGGCgCUgcucgccacagcGUCGCGGUagcgcgaccacgUCGAcgagucugugcuGCUCGCCa -3'
miRNA:   3'- -GGUUG-GA------------CAGCGUCG------------AGCU------------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 27222 0.66 0.808678
Target:  5'- gCAGCgc-UCGCAGgUgGGugUCGCCa -3'
miRNA:   3'- gGUUGgacAGCGUCgAgCUugAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 27309 0.67 0.726115
Target:  5'- cCCGcacgcauGCCg--CGCAGCagUCGAugUCGCg -3'
miRNA:   3'- -GGU-------UGGacaGCGUCG--AGCUugAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.