miRNA display CGI


Results 81 - 100 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 27786 0.67 0.727185
Target:  5'- gCAGCUcgguguaccaguUGUCagGCAGCUCGGAUcgucgaUCGCUg -3'
miRNA:   3'- gGUUGG------------ACAG--CGUCGAGCUUG------AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 28284 0.66 0.808678
Target:  5'- -aAGCUcGUCGacaAGCUCGcGCcCGCCa -3'
miRNA:   3'- ggUUGGaCAGCg--UCGAGCuUGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 28543 0.68 0.650598
Target:  5'- aCGAUCaGUCGUGGCUCG-GCUcCGCg -3'
miRNA:   3'- gGUUGGaCAGCGUCGAGCuUGA-GCGg -5'
26328 5' -53.7 NC_005345.2 + 29047 0.7 0.562167
Target:  5'- uUCGAguuUCUG-CGUGGCggcggCGGGCUCGCCg -3'
miRNA:   3'- -GGUU---GGACaGCGUCGa----GCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 29273 0.71 0.477281
Target:  5'- gCAACaucgGcgCGCGGUUCGAGgUCGCCc -3'
miRNA:   3'- gGUUGga--Ca-GCGUCGAGCUUgAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 29378 0.69 0.617292
Target:  5'- aCGGCUcggUGUCGUacGGCUCGGccGC-CGCCu -3'
miRNA:   3'- gGUUGG---ACAGCG--UCGAGCU--UGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 29479 0.66 0.789212
Target:  5'- uCCAACUcGUCG-AGCUCGucggCGCUg -3'
miRNA:   3'- -GGUUGGaCAGCgUCGAGCuugaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 29734 0.69 0.628394
Target:  5'- aCCGACgCgg-CGCAGCcgacCGAGCUCGgCg -3'
miRNA:   3'- -GGUUG-GacaGCGUCGa---GCUUGAGCgG- -5'
26328 5' -53.7 NC_005345.2 + 29945 0.73 0.390047
Target:  5'- aCCGGCUcgacGUCGgGGCcgUCGGGCUCGUCg -3'
miRNA:   3'- -GGUUGGa---CAGCgUCG--AGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 30113 0.67 0.733587
Target:  5'- gCCGACCcccGUacCGaCGGCUCGGGCggcgacgucgaggCGCCg -3'
miRNA:   3'- -GGUUGGa--CA--GC-GUCGAGCUUGa------------GCGG- -5'
26328 5' -53.7 NC_005345.2 + 30281 0.67 0.705612
Target:  5'- --cACCUGcgcugucgaUCGCGGCcCGcaccuGCUCGCCu -3'
miRNA:   3'- gguUGGAC---------AGCGUCGaGCu----UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 31574 0.69 0.615073
Target:  5'- aCGACCUGaUGCAGCUCugccgggcccuGCUCGgCg -3'
miRNA:   3'- gGUUGGACaGCGUCGAGcu---------UGAGCgG- -5'
26328 5' -53.7 NC_005345.2 + 31601 0.66 0.769079
Target:  5'- uCUGGCCaaUG-CGCAGCUCGGcuUUCGUCc -3'
miRNA:   3'- -GGUUGG--ACaGCGUCGAGCUu-GAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 31809 0.68 0.666104
Target:  5'- gCCGACCUcgacgacgucgaggcGagGCAGCUggucaaggaCGggUUCGCCc -3'
miRNA:   3'- -GGUUGGA---------------CagCGUCGA---------GCuuGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 32048 0.67 0.727185
Target:  5'- uUCGACCUcggguUCG-AGUUCGGGCUCGaCCu -3'
miRNA:   3'- -GGUUGGAc----AGCgUCGAGCUUGAGC-GG- -5'
26328 5' -53.7 NC_005345.2 + 32193 0.74 0.346303
Target:  5'- -gAACCUgGUCGU-GUUCGGGCUCGUCa -3'
miRNA:   3'- ggUUGGA-CAGCGuCGAGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 32529 0.71 0.51904
Target:  5'- cCCGAUCUG-CGCGGgUCcGGGC-CGCCc -3'
miRNA:   3'- -GGUUGGACaGCGUCgAG-CUUGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 33036 0.68 0.683746
Target:  5'- gCCGGCCgGcCGCuGCUCacauggcgcGAGCUCGgCg -3'
miRNA:   3'- -GGUUGGaCaGCGuCGAG---------CUUGAGCgG- -5'
26328 5' -53.7 NC_005345.2 + 33099 0.74 0.329816
Target:  5'- gCGAUCUGaCGCAGCcgcagcgCGuACUCGCCg -3'
miRNA:   3'- gGUUGGACaGCGUCGa------GCuUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 33313 0.72 0.457031
Target:  5'- -gAACCUGcgcggUGUAGCUCGGGCcgucggccggagUCGCCg -3'
miRNA:   3'- ggUUGGACa----GCGUCGAGCUUG------------AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.