miRNA display CGI


Results 101 - 120 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 33566 0.67 0.737833
Target:  5'- -aGGCCUGaaaaccggacUCGCGGCugUCGcGgUCGCCg -3'
miRNA:   3'- ggUUGGAC----------AGCGUCG--AGCuUgAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 33661 0.88 0.043216
Target:  5'- cCCGACUUGcggCGCAGCUCGGGCUCGaCCc -3'
miRNA:   3'- -GGUUGGACa--GCGUCGAGCUUGAGC-GG- -5'
26328 5' -53.7 NC_005345.2 + 34186 0.66 0.769079
Target:  5'- cCCGACCgacugaucacGcCGCGGCgCGAuccUUCGCCg -3'
miRNA:   3'- -GGUUGGa---------CaGCGUCGaGCUu--GAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 34307 0.7 0.562167
Target:  5'- -aAGCa-GUCGCAGCUCGccgUCGCCc -3'
miRNA:   3'- ggUUGgaCAGCGUCGAGCuugAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 34312 0.66 0.808678
Target:  5'- gCAGCCcGgcaaGCuGCUCGGGCgUCGaCCa -3'
miRNA:   3'- gGUUGGaCag--CGuCGAGCUUG-AGC-GG- -5'
26328 5' -53.7 NC_005345.2 + 34427 0.84 0.082249
Target:  5'- gCCGGCCUcGgugUGCAGCaCGAGCUCGCCg -3'
miRNA:   3'- -GGUUGGA-Ca--GCGUCGaGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 34776 0.7 0.562167
Target:  5'- aCCGGCCgGUCGC----CGAGCUgCGCCg -3'
miRNA:   3'- -GGUUGGaCAGCGucgaGCUUGA-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 34820 0.66 0.808678
Target:  5'- gCCGugcGCCUGccccUCGCcgacguGCUCgcaGAACUCGCa -3'
miRNA:   3'- -GGU---UGGAC----AGCGu-----CGAG---CUUGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 34829 0.69 0.616183
Target:  5'- aUCGGCCUGaucaucaccgggaUCGCGgcGCUCGugacccuGCUCGUCg -3'
miRNA:   3'- -GGUUGGAC-------------AGCGU--CGAGCu------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 36252 0.71 0.508456
Target:  5'- gCGGCC-GUCGCGGCgaucgaggCGAGCg-GCCa -3'
miRNA:   3'- gGUUGGaCAGCGUCGa-------GCUUGagCGG- -5'
26328 5' -53.7 NC_005345.2 + 36618 0.66 0.768057
Target:  5'- gCGGCCgggcucgUGcCGCuGCgCGggUUCGCCa -3'
miRNA:   3'- gGUUGG-------ACaGCGuCGaGCuuGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 36798 0.69 0.639499
Target:  5'- aCAGCCgcagCGCAGCUgaCGAAg-CGCCu -3'
miRNA:   3'- gGUUGGaca-GCGUCGA--GCUUgaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 36992 0.67 0.705612
Target:  5'- uCgAACCUGUCG-AGUaCGGGCUCGgUCg -3'
miRNA:   3'- -GgUUGGACAGCgUCGaGCUUGAGC-GG- -5'
26328 5' -53.7 NC_005345.2 + 37073 0.7 0.540459
Target:  5'- gUCGAUCUGUCGCuGUcggCGAGCgaugaacucggCGCCg -3'
miRNA:   3'- -GGUUGGACAGCGuCGa--GCUUGa----------GCGG- -5'
26328 5' -53.7 NC_005345.2 + 37670 0.7 0.573111
Target:  5'- gCC-GCCUG-CGCGGCccUGAugUCGUCg -3'
miRNA:   3'- -GGuUGGACaGCGUCGa-GCUugAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 37739 0.68 0.650598
Target:  5'- gCCGGCUggucggcGUCGUcgAGgUCGAgcuGCUCGCCc -3'
miRNA:   3'- -GGUUGGa------CAGCG--UCgAGCU---UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 37955 0.67 0.758792
Target:  5'- gCCAcagGCCggcGUCGaccaGGCUgCGGACcugCGCCg -3'
miRNA:   3'- -GGU---UGGa--CAGCg---UCGA-GCUUGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 38307 0.66 0.789212
Target:  5'- uCCGcCCac-CGCAGCUCGGcgccgGCUCGUg -3'
miRNA:   3'- -GGUuGGacaGCGUCGAGCU-----UGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 38547 0.66 0.799033
Target:  5'- aCCGGCCgcGcCGCuGCUCGugccaccGCUCGUa -3'
miRNA:   3'- -GGUUGGa-CaGCGuCGAGCu------UGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 39048 0.67 0.758792
Target:  5'- aCCGGCCgGUgggcgcuaCGCAgGCggCGAucgaguggacGCUCGCCg -3'
miRNA:   3'- -GGUUGGaCA--------GCGU-CGa-GCU----------UGAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.