miRNA display CGI


Results 61 - 80 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 29479 0.66 0.789212
Target:  5'- uCCAACUcGUCG-AGCUCGucggCGCUg -3'
miRNA:   3'- -GGUUGGaCAGCgUCGAGCuugaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 29378 0.69 0.617292
Target:  5'- aCGGCUcggUGUCGUacGGCUCGGccGC-CGCCu -3'
miRNA:   3'- gGUUGG---ACAGCG--UCGAGCU--UGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 29273 0.71 0.477281
Target:  5'- gCAACaucgGcgCGCGGUUCGAGgUCGCCc -3'
miRNA:   3'- gGUUGga--Ca-GCGUCGAGCUUgAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 29047 0.7 0.562167
Target:  5'- uUCGAguuUCUG-CGUGGCggcggCGGGCUCGCCg -3'
miRNA:   3'- -GGUU---GGACaGCGUCGa----GCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 28543 0.68 0.650598
Target:  5'- aCGAUCaGUCGUGGCUCG-GCUcCGCg -3'
miRNA:   3'- gGUUGGaCAGCGUCGAGCuUGA-GCGg -5'
26328 5' -53.7 NC_005345.2 + 28284 0.66 0.808678
Target:  5'- -aAGCUcGUCGacaAGCUCGcGCcCGCCa -3'
miRNA:   3'- ggUUGGaCAGCg--UCGAGCuUGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 27786 0.67 0.727185
Target:  5'- gCAGCUcgguguaccaguUGUCagGCAGCUCGGAUcgucgaUCGCUg -3'
miRNA:   3'- gGUUGG------------ACAG--CGUCGAGCUUG------AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 27309 0.67 0.726115
Target:  5'- cCCGcacgcauGCCg--CGCAGCagUCGAugUCGCg -3'
miRNA:   3'- -GGU-------UGGacaGCGUCG--AGCUugAGCGg -5'
26328 5' -53.7 NC_005345.2 + 27222 0.66 0.808678
Target:  5'- gCAGCgc-UCGCAGgUgGGugUCGCCa -3'
miRNA:   3'- gGUUGgacAGCGUCgAgCUugAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 26991 0.66 0.799033
Target:  5'- gCCGGCgCUgcucgccacagcGUCGCGGUagcgcgaccacgUCGAcgagucugugcuGCUCGCCa -3'
miRNA:   3'- -GGUUG-GA------------CAGCGUCG------------AGCU------------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 26795 0.7 0.562167
Target:  5'- gCCGgcGCCgcGUCGCAGg-CGcuGCUCGCCg -3'
miRNA:   3'- -GGU--UGGa-CAGCGUCgaGCu-UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 26751 0.67 0.758792
Target:  5'- aCCGGCCcGUCccguaCAGCUCGAccgaGCCg -3'
miRNA:   3'- -GGUUGGaCAGc----GUCGAGCUugagCGG- -5'
26328 5' -53.7 NC_005345.2 + 26588 0.67 0.758792
Target:  5'- -gGGCUcGaaUCGguGCUCGcGCUCGCUg -3'
miRNA:   3'- ggUUGGaC--AGCguCGAGCuUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 26495 0.68 0.655033
Target:  5'- cCCGACC-GUcCGCAGgUCGAccccuugcacccggcACgagCGCCg -3'
miRNA:   3'- -GGUUGGaCA-GCGUCgAGCU---------------UGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 26408 0.73 0.408529
Target:  5'- aCCGACCUGUCGgGGUUCcugaaaGAGCaCGCg -3'
miRNA:   3'- -GGUUGGACAGCgUCGAG------CUUGaGCGg -5'
26328 5' -53.7 NC_005345.2 + 26109 0.66 0.789212
Target:  5'- aCGACCUcGgcgggaUGCAGCuggUCGAGUUCGCCc -3'
miRNA:   3'- gGUUGGA-Ca-----GCGUCG---AGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 26056 0.66 0.769079
Target:  5'- cUCGGCgaG-CGCcuGCUCGAACUgGCUc -3'
miRNA:   3'- -GGUUGgaCaGCGu-CGAGCUUGAgCGG- -5'
26328 5' -53.7 NC_005345.2 + 25573 0.74 0.337986
Target:  5'- gCGACCcgcaGcCGCAGCUCGGACgcgGCCg -3'
miRNA:   3'- gGUUGGa---CaGCGUCGAGCUUGag-CGG- -5'
26328 5' -53.7 NC_005345.2 + 25361 0.66 0.799034
Target:  5'- gCCGuCCUGgCGUggcagugccGGCUCGAcgcgaUCGCCg -3'
miRNA:   3'- -GGUuGGACaGCG---------UCGAGCUug---AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 25220 0.7 0.543698
Target:  5'- gCCGGCCgGUCaccggguGCAGCUCguagaaccgcagcagGAACUCgGCCu -3'
miRNA:   3'- -GGUUGGaCAG-------CGUCGAG---------------CUUGAG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.