miRNA display CGI


Results 81 - 100 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 24970 0.68 0.69471
Target:  5'- gCGGCCgGUCGaguGGCaagugcccgucgUCGAgguGCUCGCCg -3'
miRNA:   3'- gGUUGGaCAGCg--UCG------------AGCU---UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 24924 0.67 0.737833
Target:  5'- cUCGGCgUGUgggaGCAGCcgccgcgaUCGAACUCgGCCc -3'
miRNA:   3'- -GGUUGgACAg---CGUCG--------AGCUUGAG-CGG- -5'
26328 5' -53.7 NC_005345.2 + 24817 0.66 0.799034
Target:  5'- gCGACCgGaUCGUgcucgGGUUCGAcgGCUCGCg -3'
miRNA:   3'- gGUUGGaC-AGCG-----UCGAGCU--UGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 24756 0.66 0.789212
Target:  5'- gCguGgCUGUCGCAGCcCGAaguGCgggCGUCg -3'
miRNA:   3'- -GguUgGACAGCGUCGaGCU---UGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 23962 0.67 0.748373
Target:  5'- aCCGcggGCugCUGUCGCGGCcgCGAggcuggggcaAgUCGCCg -3'
miRNA:   3'- -GGU---UG--GACAGCGUCGa-GCU----------UgAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 23923 0.66 0.779223
Target:  5'- aCgAGCC-GUCGUgcgugAGCUCGcACUCGgCa -3'
miRNA:   3'- -GgUUGGaCAGCG-----UCGAGCuUGAGCgG- -5'
26328 5' -53.7 NC_005345.2 + 23665 0.79 0.181158
Target:  5'- gCCGACCaggGUCGCGGCcggUCGGGCggGCCg -3'
miRNA:   3'- -GGUUGGa--CAGCGUCG---AGCUUGagCGG- -5'
26328 5' -53.7 NC_005345.2 + 23586 0.67 0.758792
Target:  5'- gCGGCUgcggGUCGCGGCguUCGGcGCgaCGCCg -3'
miRNA:   3'- gGUUGGa---CAGCGUCG--AGCU-UGa-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 22856 0.67 0.705612
Target:  5'- cCCGgucGCCggGUCGguGCgcuucgCGAACUUGUg -3'
miRNA:   3'- -GGU---UGGa-CAGCguCGa-----GCUUGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 22544 0.69 0.628394
Target:  5'- aCCGGCCUGcgcCGCAGCgagcgCGAGCaccgauucgaGCCc -3'
miRNA:   3'- -GGUUGGACa--GCGUCGa----GCUUGag--------CGG- -5'
26328 5' -53.7 NC_005345.2 + 22452 0.71 0.508456
Target:  5'- uUCAGCUUGgUCGCGGCgUCGGccuuuAC-CGCCa -3'
miRNA:   3'- -GGUUGGAC-AGCGUCG-AGCU-----UGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 21521 0.67 0.727185
Target:  5'- gCgGACCgcgaGCAGCggacCGAuCUCGCCg -3'
miRNA:   3'- -GgUUGGacagCGUCGa---GCUuGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 19395 0.67 0.716441
Target:  5'- gCCGAgCagcGUCGCgccgAGCUCGGucgGCUgCGCCg -3'
miRNA:   3'- -GGUUgGa--CAGCG----UCGAGCU---UGA-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 19063 0.73 0.390047
Target:  5'- cCCGGCCgucUCGgGGC-CGuGCUCGCCg -3'
miRNA:   3'- -GGUUGGac-AGCgUCGaGCuUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 18896 0.72 0.466087
Target:  5'- cCCGGCCUGcUCgGCGGCcgCGAucauguccucgcgGCUCGCg -3'
miRNA:   3'- -GGUUGGAC-AG-CGUCGa-GCU-------------UGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 18775 0.66 0.789212
Target:  5'- cUCGACCUG-CGCccGCcgCGGGCU-GCCg -3'
miRNA:   3'- -GGUUGGACaGCGu-CGa-GCUUGAgCGG- -5'
26328 5' -53.7 NC_005345.2 + 18532 0.68 0.683746
Target:  5'- gCCAugugcACCgGUgGgCuGCUCGGggcGCUCGCCg -3'
miRNA:   3'- -GGU-----UGGaCAgC-GuCGAGCU---UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 18199 0.67 0.701259
Target:  5'- uCCAaugcACCcgGUCGCGGCcgugcaccgugagCGGGC-CGCCg -3'
miRNA:   3'- -GGU----UGGa-CAGCGUCGa------------GCUUGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 17645 0.74 0.363371
Target:  5'- cCUGACCUG-CGCuucgauGCUCGGcgccuacgccgcGCUCGCCc -3'
miRNA:   3'- -GGUUGGACaGCGu-----CGAGCU------------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 17534 0.67 0.748373
Target:  5'- -gGACCgUGUCGCcauGCgauccgCGGGCcgCGCCg -3'
miRNA:   3'- ggUUGG-ACAGCGu--CGa-----GCUUGa-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.