miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 33661 0.88 0.043216
Target:  5'- cCCGACUUGcggCGCAGCUCGGGCUCGaCCc -3'
miRNA:   3'- -GGUUGGACa--GCGUCGAGCUUGAGC-GG- -5'
26328 5' -53.7 NC_005345.2 + 26795 0.7 0.562167
Target:  5'- gCCGgcGCCgcGUCGCAGg-CGcuGCUCGCCg -3'
miRNA:   3'- -GGU--UGGa-CAGCGUCgaGCu-UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 8968 0.7 0.573111
Target:  5'- cUCGACCUGUCGCuccGUcgaCGGGCgugUGCCu -3'
miRNA:   3'- -GGUUGGACAGCGu--CGa--GCUUGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 28284 0.66 0.808678
Target:  5'- -aAGCUcGUCGacaAGCUCGcGCcCGCCa -3'
miRNA:   3'- ggUUGGaCAGCg--UCGAGCuUGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 45744 0.75 0.283875
Target:  5'- cCCGccGCCUcUCuCAGCcCGAACUCGCCg -3'
miRNA:   3'- -GGU--UGGAcAGcGUCGaGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 10704 0.75 0.313916
Target:  5'- cCCGGCCUGUCcugcgGCAGCUCGu-Cg-GCCg -3'
miRNA:   3'- -GGUUGGACAG-----CGUCGAGCuuGagCGG- -5'
26328 5' -53.7 NC_005345.2 + 17645 0.74 0.363371
Target:  5'- cCUGACCUG-CGCuucgauGCUCGGcgccuacgccgcGCUCGCCc -3'
miRNA:   3'- -GGUUGGACaGCGu-----CGAGCU------------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 8036 0.73 0.372121
Target:  5'- cUCGACCUcgCGCAGCUgcaCGAgcugcagaucaaGCUCGCCg -3'
miRNA:   3'- -GGUUGGAcaGCGUCGA---GCU------------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 29273 0.71 0.477281
Target:  5'- gCAACaucgGcgCGCGGUUCGAGgUCGCCc -3'
miRNA:   3'- gGUUGga--Ca-GCGUCGAGCUUgAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 34307 0.7 0.562167
Target:  5'- -aAGCa-GUCGCAGCUCGccgUCGCCc -3'
miRNA:   3'- ggUUGgaCAGCGUCGAGCuugAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 32529 0.71 0.51904
Target:  5'- cCCGAUCUG-CGCGGgUCcGGGC-CGCCc -3'
miRNA:   3'- -GGUUGGACaGCGUCgAG-CUUGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 5165 0.72 0.417972
Target:  5'- gCGACUcGUCGCcGCccUCGAagGCUCGCCc -3'
miRNA:   3'- gGUUGGaCAGCGuCG--AGCU--UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 5680 0.81 0.126274
Target:  5'- gCCGACCg--CGCuGCgccgCGAACUCGCCg -3'
miRNA:   3'- -GGUUGGacaGCGuCGa---GCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 45167 0.7 0.52971
Target:  5'- uCCGACCgggccucgacGUCGCAGC-CGAGuaUGCCg -3'
miRNA:   3'- -GGUUGGa---------CAGCGUCGaGCUUgaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 23665 0.79 0.181158
Target:  5'- gCCGACCaggGUCGCGGCcggUCGGGCggGCCg -3'
miRNA:   3'- -GGUUGGa--CAGCGUCG---AGCUUGagCGG- -5'
26328 5' -53.7 NC_005345.2 + 26408 0.73 0.408529
Target:  5'- aCCGACCUGUCGgGGUUCcugaaaGAGCaCGCg -3'
miRNA:   3'- -GGUUGGACAGCgUCGAG------CUUGaGCGg -5'
26328 5' -53.7 NC_005345.2 + 14432 0.7 0.52971
Target:  5'- gCGAUCgagGUCGCGcucuGCUC--GCUCGCCg -3'
miRNA:   3'- gGUUGGa--CAGCGU----CGAGcuUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 29047 0.7 0.562167
Target:  5'- uUCGAguuUCUG-CGUGGCggcggCGGGCUCGCCg -3'
miRNA:   3'- -GGUU---GGACaGCGUCGa----GCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 9424 0.77 0.230689
Target:  5'- aCCGGCUgucaaaggUGUCGUGGCcCGAGCUCGUCc -3'
miRNA:   3'- -GGUUGG--------ACAGCGUCGaGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 32193 0.74 0.346303
Target:  5'- -gAACCUgGUCGU-GUUCGGGCUCGUCa -3'
miRNA:   3'- ggUUGGA-CAGCGuCGAGCUUGAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.