Results 21 - 40 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 16490 | 0.7 | 0.584104 |
Target: 5'- aUCGuCCUGcUCGC-GCUCGAccugcuGCUCGCg -3' miRNA: 3'- -GGUuGGAC-AGCGuCGAGCU------UGAGCGg -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 8968 | 0.7 | 0.573111 |
Target: 5'- cUCGACCUGUCGCuccGUcgaCGGGCgugUGCCu -3' miRNA: 3'- -GGUUGGACAGCGu--CGa--GCUUGa--GCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 5165 | 0.72 | 0.417972 |
Target: 5'- gCGACUcGUCGCcGCccUCGAagGCUCGCCc -3' miRNA: 3'- gGUUGGaCAGCGuCG--AGCU--UGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 9424 | 0.77 | 0.230689 |
Target: 5'- aCCGGCUgucaaaggUGUCGUGGCcCGAGCUCGUCc -3' miRNA: 3'- -GGUUGG--------ACAGCGUCGaGCUUGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 14367 | 0.68 | 0.672732 |
Target: 5'- gCGACCcGgCGCAGCUCGGcgaccgGCcggUGCCg -3' miRNA: 3'- gGUUGGaCaGCGUCGAGCU------UGa--GCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 29734 | 0.69 | 0.628394 |
Target: 5'- aCCGACgCgg-CGCAGCcgacCGAGCUCGgCg -3' miRNA: 3'- -GGUUG-GacaGCGUCGa---GCUUGAGCgG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 26795 | 0.7 | 0.562167 |
Target: 5'- gCCGgcGCCgcGUCGCAGg-CGcuGCUCGCCg -3' miRNA: 3'- -GGU--UGGa-CAGCGUCgaGCu-UGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 23665 | 0.79 | 0.181158 |
Target: 5'- gCCGACCaggGUCGCGGCcggUCGGGCggGCCg -3' miRNA: 3'- -GGUUGGa--CAGCGUCG---AGCUUGagCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 34829 | 0.69 | 0.616183 |
Target: 5'- aUCGGCCUGaucaucaccgggaUCGCGgcGCUCGugacccuGCUCGUCg -3' miRNA: 3'- -GGUUGGAC-------------AGCGU--CGAGCu------UGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 5680 | 0.81 | 0.126274 |
Target: 5'- gCCGACCg--CGCuGCgccgCGAACUCGCCg -3' miRNA: 3'- -GGUUGGacaGCGuCGa---GCUUGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 29047 | 0.7 | 0.562167 |
Target: 5'- uUCGAguuUCUG-CGUGGCggcggCGGGCUCGCCg -3' miRNA: 3'- -GGUU---GGACaGCGUCGa----GCUUGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 43973 | 0.69 | 0.595138 |
Target: 5'- gCAGCCcg--GCGGCUCGcccGACUCGUCg -3' miRNA: 3'- gGUUGGacagCGUCGAGC---UUGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 45167 | 0.7 | 0.52971 |
Target: 5'- uCCGACCgggccucgacGUCGCAGC-CGAGuaUGCCg -3' miRNA: 3'- -GGUUGGa---------CAGCGUCGaGCUUgaGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 29273 | 0.71 | 0.477281 |
Target: 5'- gCAACaucgGcgCGCGGUUCGAGgUCGCCc -3' miRNA: 3'- gGUUGga--Ca-GCGUCGAGCUUgAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 17645 | 0.74 | 0.363371 |
Target: 5'- cCUGACCUG-CGCuucgauGCUCGGcgccuacgccgcGCUCGCCc -3' miRNA: 3'- -GGUUGGACaGCGu-----CGAGCU------------UGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 45744 | 0.75 | 0.283875 |
Target: 5'- cCCGccGCCUcUCuCAGCcCGAACUCGCCg -3' miRNA: 3'- -GGU--UGGAcAGcGUCGaGCUUGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 18532 | 0.68 | 0.683746 |
Target: 5'- gCCAugugcACCgGUgGgCuGCUCGGggcGCUCGCCg -3' miRNA: 3'- -GGU-----UGGaCAgC-GuCGAGCU---UGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 17485 | 0.68 | 0.672732 |
Target: 5'- gCCGAUCuUGUacgcCGCGGUcaCGAACUCGCa -3' miRNA: 3'- -GGUUGG-ACA----GCGUCGa-GCUUGAGCGg -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 1336 | 0.68 | 0.650598 |
Target: 5'- gCCGGCCggGUCGCGGU---AACgCGCCu -3' miRNA: 3'- -GGUUGGa-CAGCGUCGagcUUGaGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 40386 | 0.69 | 0.632837 |
Target: 5'- cUCAuCCUG-CGCAGCcucccCGAugcugcagucgucgcGCUCGCCa -3' miRNA: 3'- -GGUuGGACaGCGUCGa----GCU---------------UGAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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