Results 41 - 60 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 31809 | 0.68 | 0.666104 |
Target: 5'- gCCGACCUcgacgacgucgaggcGagGCAGCUggucaaggaCGggUUCGCCc -3' miRNA: 3'- -GGUUGGA---------------CagCGUCGA---------GCuuGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 26795 | 0.7 | 0.562167 |
Target: 5'- gCCGgcGCCgcGUCGCAGg-CGcuGCUCGCCg -3' miRNA: 3'- -GGU--UGGa-CAGCGUCgaGCu-UGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 23665 | 0.79 | 0.181158 |
Target: 5'- gCCGACCaggGUCGCGGCcggUCGGGCggGCCg -3' miRNA: 3'- -GGUUGGa--CAGCGUCG---AGCUUGagCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 28543 | 0.68 | 0.650598 |
Target: 5'- aCGAUCaGUCGUGGCUCG-GCUcCGCg -3' miRNA: 3'- gGUUGGaCAGCGUCGAGCuUGA-GCGg -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 5680 | 0.81 | 0.126274 |
Target: 5'- gCCGACCg--CGCuGCgccgCGAACUCGCCg -3' miRNA: 3'- -GGUUGGacaGCGuCGa---GCUUGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 23586 | 0.67 | 0.758792 |
Target: 5'- gCGGCUgcggGUCGCGGCguUCGGcGCgaCGCCg -3' miRNA: 3'- gGUUGGa---CAGCGUCG--AGCU-UGa-GCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 45744 | 0.75 | 0.283875 |
Target: 5'- cCCGccGCCUcUCuCAGCcCGAACUCGCCg -3' miRNA: 3'- -GGU--UGGAcAGcGUCGaGCUUGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 23962 | 0.67 | 0.748373 |
Target: 5'- aCCGcggGCugCUGUCGCGGCcgCGAggcuggggcaAgUCGCCg -3' miRNA: 3'- -GGU---UG--GACAGCGUCGa-GCU----------UgAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 30113 | 0.67 | 0.733587 |
Target: 5'- gCCGACCcccGUacCGaCGGCUCGGGCggcgacgucgaggCGCCg -3' miRNA: 3'- -GGUUGGa--CA--GC-GUCGAGCUUGa------------GCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 11553 | 0.67 | 0.705612 |
Target: 5'- aCGACCgcgaaGUUcaucgcccgGCAGCUCGAcgACgggCGCCu -3' miRNA: 3'- gGUUGGa----CAG---------CGUCGAGCU--UGa--GCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 5229 | 0.67 | 0.705612 |
Target: 5'- gCCGGCCUGaUCGCcgacgcGCUgCGcGC-CGCCg -3' miRNA: 3'- -GGUUGGAC-AGCGu-----CGA-GCuUGaGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 18532 | 0.68 | 0.683746 |
Target: 5'- gCCAugugcACCgGUgGgCuGCUCGGggcGCUCGCCg -3' miRNA: 3'- -GGU-----UGGaCAgC-GuCGAGCU---UGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 17485 | 0.68 | 0.672732 |
Target: 5'- gCCGAUCuUGUacgcCGCGGUcaCGAACUCGCa -3' miRNA: 3'- -GGUUGG-ACA----GCGUCGa-GCUUGAGCGg -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 36798 | 0.69 | 0.639499 |
Target: 5'- aCAGCCgcagCGCAGCUgaCGAAg-CGCCu -3' miRNA: 3'- gGUUGGaca-GCGUCGA--GCUUgaGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 34829 | 0.69 | 0.616183 |
Target: 5'- aUCGGCCUGaucaucaccgggaUCGCGgcGCUCGugacccuGCUCGUCg -3' miRNA: 3'- -GGUUGGAC-------------AGCGU--CGAGCu------UGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 16490 | 0.7 | 0.584104 |
Target: 5'- aUCGuCCUGcUCGC-GCUCGAccugcuGCUCGCg -3' miRNA: 3'- -GGUuGGAC-AGCGuCGAGCU------UGAGCGg -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 8968 | 0.7 | 0.573111 |
Target: 5'- cUCGACCUGUCGCuccGUcgaCGGGCgugUGCCu -3' miRNA: 3'- -GGUUGGACAGCGu--CGa--GCUUGa--GCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 45167 | 0.7 | 0.52971 |
Target: 5'- uCCGACCgggccucgacGUCGCAGC-CGAGuaUGCCg -3' miRNA: 3'- -GGUUGGa---------CAGCGUCGaGCUUgaGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 29273 | 0.71 | 0.477281 |
Target: 5'- gCAACaucgGcgCGCGGUUCGAGgUCGCCc -3' miRNA: 3'- gGUUGga--Ca-GCGUCGAGCUUgAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 17645 | 0.74 | 0.363371 |
Target: 5'- cCUGACCUG-CGCuucgauGCUCGGcgccuacgccgcGCUCGCCc -3' miRNA: 3'- -GGUUGGACaGCGu-----CGAGCU------------UGAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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