miRNA display CGI


Results 101 - 120 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 4970 0.71 0.51904
Target:  5'- uCCuGCggUGUCGCGGC-CGAucggacgaacgcGCUCGCCa -3'
miRNA:   3'- -GGuUGg-ACAGCGUCGaGCU------------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 36252 0.71 0.508456
Target:  5'- gCGGCC-GUCGCGGCgaucgaggCGAGCg-GCCa -3'
miRNA:   3'- gGUUGGaCAGCGUCGa-------GCUUGagCGG- -5'
26328 5' -53.7 NC_005345.2 + 42177 0.73 0.390047
Target:  5'- cCCGaaagcGCCUGcCGCAGCgaagCGA--UCGCCg -3'
miRNA:   3'- -GGU-----UGGACaGCGUCGa---GCUugAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 8659 0.72 0.417972
Target:  5'- gCCGAUC-GUCGCGGCgau--CUCGCCg -3'
miRNA:   3'- -GGUUGGaCAGCGUCGagcuuGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 22452 0.71 0.508456
Target:  5'- uUCAGCUUGgUCGCGGCgUCGGccuuuAC-CGCCa -3'
miRNA:   3'- -GGUUGGAC-AGCGUCG-AGCU-----UGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 18896 0.72 0.466087
Target:  5'- cCCGGCCUGcUCgGCGGCcgCGAucauguccucgcgGCUCGCg -3'
miRNA:   3'- -GGUUGGAC-AG-CGUCGa-GCU-------------UGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 8971 0.7 0.584104
Target:  5'- gCCGGCCUcGaUCGCAGCU---GCgCGCCg -3'
miRNA:   3'- -GGUUGGA-C-AGCGUCGAgcuUGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 41887 0.69 0.617292
Target:  5'- uCCGGgCUGUCgaGCAGCU---GCUCGUCg -3'
miRNA:   3'- -GGUUgGACAG--CGUCGAgcuUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 16291 0.71 0.497965
Target:  5'- gCAGCUUGUacUGCGGCagcccgaucgccUCGAACUCgGCCc -3'
miRNA:   3'- gGUUGGACA--GCGUCG------------AGCUUGAG-CGG- -5'
26328 5' -53.7 NC_005345.2 + 21521 0.67 0.727185
Target:  5'- gCgGACCgcgaGCAGCggacCGAuCUCGCCg -3'
miRNA:   3'- -GgUUGGacagCGUCGa---GCUuGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 3879 0.67 0.727185
Target:  5'- gCCGaguGCCUGcagCGCGGCgagggcggggCGGACgUCGUCg -3'
miRNA:   3'- -GGU---UGGACa--GCGUCGa---------GCUUG-AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 19395 0.67 0.716441
Target:  5'- gCCGAgCagcGUCGCgccgAGCUCGGucgGCUgCGCCg -3'
miRNA:   3'- -GGUUgGa--CAGCG----UCGAGCU---UGA-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 2790 0.68 0.672732
Target:  5'- aCGGCUUGUCgGCGccggcgugcGCUCGA--UCGCCu -3'
miRNA:   3'- gGUUGGACAG-CGU---------CGAGCUugAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 26495 0.68 0.655033
Target:  5'- cCCGACC-GUcCGCAGgUCGAccccuugcacccggcACgagCGCCg -3'
miRNA:   3'- -GGUUGGaCA-GCGUCgAGCU---------------UGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 37739 0.68 0.650598
Target:  5'- gCCGGCUggucggcGUCGUcgAGgUCGAgcuGCUCGCCc -3'
miRNA:   3'- -GGUUGGa------CAGCG--UCgAGCU---UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 4271 0.68 0.650598
Target:  5'- aCCGGCg-GUgcggGCAGCUCGGGCUCGg- -3'
miRNA:   3'- -GGUUGgaCAg---CGUCGAGCUUGAGCgg -5'
26328 5' -53.7 NC_005345.2 + 22544 0.69 0.628394
Target:  5'- aCCGGCCUGcgcCGCAGCgagcgCGAGCaccgauucgaGCCc -3'
miRNA:   3'- -GGUUGGACa--GCGUCGa----GCUUGag--------CGG- -5'
26328 5' -53.7 NC_005345.2 + 14175 0.69 0.628394
Target:  5'- aCCAugaGCCcGUCGaacccCGGCUUGAGCgUCGUCg -3'
miRNA:   3'- -GGU---UGGaCAGC-----GUCGAGCUUG-AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 29378 0.69 0.617292
Target:  5'- aCGGCUcggUGUCGUacGGCUCGGccGC-CGCCu -3'
miRNA:   3'- gGUUGG---ACAGCG--UCGAGCU--UGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 11153 0.69 0.628394
Target:  5'- aCC-ACgUGaUGCcaAGCUCGGcACUCGCCg -3'
miRNA:   3'- -GGuUGgACaGCG--UCGAGCU-UGAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.