Results 1 - 20 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 37955 | 0.67 | 0.758792 |
Target: 5'- gCCAcagGCCggcGUCGaccaGGCUgCGGACcugCGCCg -3' miRNA: 3'- -GGU---UGGa--CAGCg---UCGA-GCUUGa--GCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 42545 | 0.66 | 0.789212 |
Target: 5'- aCCGccGCCgGUCcaCAGCUCG--UUCGCCu -3' miRNA: 3'- -GGU--UGGaCAGc-GUCGAGCuuGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 10058 | 0.66 | 0.779223 |
Target: 5'- aCCGacgacGCCgacGUCGCGGCgagcguccacUCGA--UCGCCg -3' miRNA: 3'- -GGU-----UGGa--CAGCGUCG----------AGCUugAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 23923 | 0.66 | 0.779223 |
Target: 5'- aCgAGCC-GUCGUgcgugAGCUCGcACUCGgCa -3' miRNA: 3'- -GgUUGGaCAGCG-----UCGAGCuUGAGCgG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 3820 | 0.66 | 0.779223 |
Target: 5'- -aGGCCg--CGCAGC---AGCUCGCCg -3' miRNA: 3'- ggUUGGacaGCGUCGagcUUGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 34186 | 0.66 | 0.769079 |
Target: 5'- cCCGACCgacugaucacGcCGCGGCgCGAuccUUCGCCg -3' miRNA: 3'- -GGUUGGa---------CaGCGUCGaGCUu--GAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 26056 | 0.66 | 0.769079 |
Target: 5'- cUCGGCgaG-CGCcuGCUCGAACUgGCUc -3' miRNA: 3'- -GGUUGgaCaGCGu-CGAGCUUGAgCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 16998 | 0.66 | 0.769079 |
Target: 5'- aCGAUCUGcCGCuuguGCUUGcuCUuCGCCg -3' miRNA: 3'- gGUUGGACaGCGu---CGAGCuuGA-GCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 31601 | 0.66 | 0.769079 |
Target: 5'- uCUGGCCaaUG-CGCAGCUCGGcuUUCGUCc -3' miRNA: 3'- -GGUUGG--ACaGCGUCGAGCUu-GAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 18775 | 0.66 | 0.789212 |
Target: 5'- cUCGACCUG-CGCccGCcgCGGGCU-GCCg -3' miRNA: 3'- -GGUUGGACaGCGu-CGa-GCUUGAgCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 38307 | 0.66 | 0.789212 |
Target: 5'- uCCGcCCac-CGCAGCUCGGcgccgGCUCGUg -3' miRNA: 3'- -GGUuGGacaGCGUCGAGCU-----UGAGCGg -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 29479 | 0.66 | 0.789212 |
Target: 5'- uCCAACUcGUCG-AGCUCGucggCGCUg -3' miRNA: 3'- -GGUUGGaCAGCgUCGAGCuugaGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 39361 | 0.66 | 0.808678 |
Target: 5'- aCAGCggcgaacacgCUGUCGCAGCuacgccUCGGcggcGCaaUCGCCg -3' miRNA: 3'- gGUUG----------GACAGCGUCG------AGCU----UG--AGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 34820 | 0.66 | 0.808678 |
Target: 5'- gCCGugcGCCUGccccUCGCcgacguGCUCgcaGAACUCGCa -3' miRNA: 3'- -GGU---UGGAC----AGCGu-----CGAG---CUUGAGCGg -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 34312 | 0.66 | 0.808678 |
Target: 5'- gCAGCCcGgcaaGCuGCUCGGGCgUCGaCCa -3' miRNA: 3'- gGUUGGaCag--CGuCGAGCUUG-AGC-GG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 27222 | 0.66 | 0.808678 |
Target: 5'- gCAGCgc-UCGCAGgUgGGugUCGCCa -3' miRNA: 3'- gGUUGgacAGCGUCgAgCUugAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 44982 | 0.66 | 0.799033 |
Target: 5'- cCCGugagcGCCUGcCGCGucgacacccGCUCG-ACgagCGCCg -3' miRNA: 3'- -GGU-----UGGACaGCGU---------CGAGCuUGa--GCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 38547 | 0.66 | 0.799033 |
Target: 5'- aCCGGCCgcGcCGCuGCUCGugccaccGCUCGUa -3' miRNA: 3'- -GGUUGGa-CaGCGuCGAGCu------UGAGCGg -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 26991 | 0.66 | 0.799033 |
Target: 5'- gCCGGCgCUgcucgccacagcGUCGCGGUagcgcgaccacgUCGAcgagucugugcuGCUCGCCa -3' miRNA: 3'- -GGUUG-GA------------CAGCGUCG------------AGCU------------UGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 12923 | 0.66 | 0.799033 |
Target: 5'- aCAACCggcaGCAgGCUCGcgGACUgGCCc -3' miRNA: 3'- gGUUGGacagCGU-CGAGC--UUGAgCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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