miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 44982 0.66 0.799033
Target:  5'- cCCGugagcGCCUGcCGCGucgacacccGCUCG-ACgagCGCCg -3'
miRNA:   3'- -GGU-----UGGACaGCGU---------CGAGCuUGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 27222 0.66 0.808678
Target:  5'- gCAGCgc-UCGCAGgUgGGugUCGCCa -3'
miRNA:   3'- gGUUGgacAGCGUCgAgCUugAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 34312 0.66 0.808678
Target:  5'- gCAGCCcGgcaaGCuGCUCGGGCgUCGaCCa -3'
miRNA:   3'- gGUUGGaCag--CGuCGAGCUUG-AGC-GG- -5'
26328 5' -53.7 NC_005345.2 + 34820 0.66 0.808678
Target:  5'- gCCGugcGCCUGccccUCGCcgacguGCUCgcaGAACUCGCa -3'
miRNA:   3'- -GGU---UGGAC----AGCGu-----CGAG---CUUGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 39361 0.66 0.808678
Target:  5'- aCAGCggcgaacacgCUGUCGCAGCuacgccUCGGcggcGCaaUCGCCg -3'
miRNA:   3'- gGUUG----------GACAGCGUCG------AGCU----UG--AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 23923 0.66 0.779223
Target:  5'- aCgAGCC-GUCGUgcgugAGCUCGcACUCGgCa -3'
miRNA:   3'- -GgUUGGaCAGCG-----UCGAGCuUGAGCgG- -5'
26328 5' -53.7 NC_005345.2 + 3820 0.66 0.779223
Target:  5'- -aGGCCg--CGCAGC---AGCUCGCCg -3'
miRNA:   3'- ggUUGGacaGCGUCGagcUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 21521 0.67 0.727185
Target:  5'- gCgGACCgcgaGCAGCggacCGAuCUCGCCg -3'
miRNA:   3'- -GgUUGGacagCGUCGa---GCUuGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 27786 0.67 0.727185
Target:  5'- gCAGCUcgguguaccaguUGUCagGCAGCUCGGAUcgucgaUCGCUg -3'
miRNA:   3'- gGUUGG------------ACAG--CGUCGAGCUUG------AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 32048 0.67 0.727185
Target:  5'- uUCGACCUcggguUCG-AGUUCGGGCUCGaCCu -3'
miRNA:   3'- -GGUUGGAc----AGCgUCGAGCUUGAGC-GG- -5'
26328 5' -53.7 NC_005345.2 + 42760 0.67 0.737833
Target:  5'- cCCGGCg-GUUGCcgGGCUUGgAACUCgGCCg -3'
miRNA:   3'- -GGUUGgaCAGCG--UCGAGC-UUGAG-CGG- -5'
26328 5' -53.7 NC_005345.2 + 17534 0.67 0.748373
Target:  5'- -gGACCgUGUCGCcauGCgauccgCGGGCcgCGCCg -3'
miRNA:   3'- ggUUGG-ACAGCGu--CGa-----GCUUGa-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 26751 0.67 0.758792
Target:  5'- aCCGGCCcGUCccguaCAGCUCGAccgaGCCg -3'
miRNA:   3'- -GGUUGGaCAGc----GUCGAGCUugagCGG- -5'
26328 5' -53.7 NC_005345.2 + 42649 0.67 0.758792
Target:  5'- uCgAGCCc--UGCGGCguccacgccUCGGGCUCGCCg -3'
miRNA:   3'- -GgUUGGacaGCGUCG---------AGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 45327 0.67 0.758792
Target:  5'- gCCGACC--UCGCAGCggaCGAcCgUCGUCg -3'
miRNA:   3'- -GGUUGGacAGCGUCGa--GCUuG-AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 37955 0.67 0.758792
Target:  5'- gCCAcagGCCggcGUCGaccaGGCUgCGGACcugCGCCg -3'
miRNA:   3'- -GGU---UGGa--CAGCg---UCGA-GCUUGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 31601 0.66 0.769079
Target:  5'- uCUGGCCaaUG-CGCAGCUCGGcuUUCGUCc -3'
miRNA:   3'- -GGUUGG--ACaGCGUCGAGCUu-GAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 16998 0.66 0.769079
Target:  5'- aCGAUCUGcCGCuuguGCUUGcuCUuCGCCg -3'
miRNA:   3'- gGUUGGACaGCGu---CGAGCuuGA-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 26056 0.66 0.769079
Target:  5'- cUCGGCgaG-CGCcuGCUCGAACUgGCUc -3'
miRNA:   3'- -GGUUGgaCaGCGu-CGAGCUUGAgCGG- -5'
26328 5' -53.7 NC_005345.2 + 34186 0.66 0.769079
Target:  5'- cCCGACCgacugaucacGcCGCGGCgCGAuccUUCGCCg -3'
miRNA:   3'- -GGUUGGa---------CaGCGUCGaGCUu--GAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.