miRNA display CGI


Results 61 - 80 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 8524 0.67 0.709953
Target:  5'- gCUcGCCaUGcCGCGGCUCGcgGagagguacaccccguGCUCGCCg -3'
miRNA:   3'- -GGuUGG-ACaGCGUCGAGC--U---------------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 19395 0.67 0.716441
Target:  5'- gCCGAgCagcGUCGCgccgAGCUCGGucgGCUgCGCCg -3'
miRNA:   3'- -GGUUgGa--CAGCG----UCGAGCU---UGA-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 3879 0.67 0.727185
Target:  5'- gCCGaguGCCUGcagCGCGGCgagggcggggCGGACgUCGUCg -3'
miRNA:   3'- -GGU---UGGACa--GCGUCGa---------GCUUG-AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 21521 0.67 0.727185
Target:  5'- gCgGACCgcgaGCAGCggacCGAuCUCGCCg -3'
miRNA:   3'- -GgUUGGacagCGUCGa---GCUuGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 27786 0.67 0.727185
Target:  5'- gCAGCUcgguguaccaguUGUCagGCAGCUCGGAUcgucgaUCGCUg -3'
miRNA:   3'- gGUUGG------------ACAG--CGUCGAGCUUG------AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 32048 0.67 0.727185
Target:  5'- uUCGACCUcggguUCG-AGUUCGGGCUCGaCCu -3'
miRNA:   3'- -GGUUGGAc----AGCgUCGAGCUUGAGC-GG- -5'
26328 5' -53.7 NC_005345.2 + 31601 0.66 0.769079
Target:  5'- uCUGGCCaaUG-CGCAGCUCGGcuUUCGUCc -3'
miRNA:   3'- -GGUUGG--ACaGCGUCGAGCUu-GAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 37955 0.67 0.758792
Target:  5'- gCCAcagGCCggcGUCGaccaGGCUgCGGACcugCGCCg -3'
miRNA:   3'- -GGU---UGGa--CAGCg---UCGA-GCUUGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 45327 0.67 0.758792
Target:  5'- gCCGACC--UCGCAGCggaCGAcCgUCGUCg -3'
miRNA:   3'- -GGUUGGacAGCGUCGa--GCUuG-AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 42649 0.67 0.758792
Target:  5'- uCgAGCCc--UGCGGCguccacgccUCGGGCUCGCCg -3'
miRNA:   3'- -GgUUGGacaGCGUCG---------AGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 26751 0.67 0.758792
Target:  5'- aCCGGCCcGUCccguaCAGCUCGAccgaGCCg -3'
miRNA:   3'- -GGUUGGaCAGc----GUCGAGCUugagCGG- -5'
26328 5' -53.7 NC_005345.2 + 17534 0.67 0.748373
Target:  5'- -gGACCgUGUCGCcauGCgauccgCGGGCcgCGCCg -3'
miRNA:   3'- ggUUGG-ACAGCGu--CGa-----GCUUGa-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 42760 0.67 0.737833
Target:  5'- cCCGGCg-GUUGCcgGGCUUGgAACUCgGCCg -3'
miRNA:   3'- -GGUUGgaCAGCG--UCGAGC-UUGAG-CGG- -5'
26328 5' -53.7 NC_005345.2 + 32193 0.74 0.346303
Target:  5'- -gAACCUgGUCGU-GUUCGGGCUCGUCa -3'
miRNA:   3'- ggUUGGA-CAGCGuCGAGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 10704 0.75 0.313916
Target:  5'- cCCGGCCUGUCcugcgGCAGCUCGu-Cg-GCCg -3'
miRNA:   3'- -GGUUGGACAG-----CGUCGAGCuuGagCGG- -5'
26328 5' -53.7 NC_005345.2 + 45744 0.75 0.283875
Target:  5'- cCCGccGCCUcUCuCAGCcCGAACUCGCCg -3'
miRNA:   3'- -GGU--UGGAcAGcGUCGaGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 9424 0.77 0.230689
Target:  5'- aCCGGCUgucaaaggUGUCGUGGCcCGAGCUCGUCc -3'
miRNA:   3'- -GGUUGG--------ACAGCGUCGaGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 23665 0.79 0.181158
Target:  5'- gCCGACCaggGUCGCGGCcggUCGGGCggGCCg -3'
miRNA:   3'- -GGUUGGa--CAGCGUCG---AGCUUGagCGG- -5'
26328 5' -53.7 NC_005345.2 + 5680 0.81 0.126274
Target:  5'- gCCGACCg--CGCuGCgccgCGAACUCGCCg -3'
miRNA:   3'- -GGUUGGacaGCGuCGa---GCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 28284 0.66 0.808678
Target:  5'- -aAGCUcGUCGacaAGCUCGcGCcCGCCa -3'
miRNA:   3'- ggUUGGaCAGCg--UCGAGCuUGaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.