miRNA display CGI


Results 81 - 100 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 16490 0.7 0.584104
Target:  5'- aUCGuCCUGcUCGC-GCUCGAccugcuGCUCGCg -3'
miRNA:   3'- -GGUuGGAC-AGCGuCGAGCU------UGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 43973 0.69 0.595138
Target:  5'- gCAGCCcg--GCGGCUCGcccGACUCGUCg -3'
miRNA:   3'- gGUUGGacagCGUCGAGC---UUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 43546 0.69 0.606204
Target:  5'- gCCGAgCUcGUCGCcgacaAGCUCGccgaccgcCUCGCCa -3'
miRNA:   3'- -GGUUgGA-CAGCG-----UCGAGCuu------GAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 31574 0.69 0.615073
Target:  5'- aCGACCUGaUGCAGCUCugccgggcccuGCUCGgCg -3'
miRNA:   3'- gGUUGGACaGCGUCGAGcu---------UGAGCgG- -5'
26328 5' -53.7 NC_005345.2 + 34829 0.69 0.616183
Target:  5'- aUCGGCCUGaucaucaccgggaUCGCGgcGCUCGugacccuGCUCGUCg -3'
miRNA:   3'- -GGUUGGAC-------------AGCGU--CGAGCu------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 29734 0.69 0.628394
Target:  5'- aCCGACgCgg-CGCAGCcgacCGAGCUCGgCg -3'
miRNA:   3'- -GGUUG-GacaGCGUCGa---GCUUGAGCgG- -5'
26328 5' -53.7 NC_005345.2 + 45167 0.7 0.52971
Target:  5'- uCCGACCgggccucgacGUCGCAGC-CGAGuaUGCCg -3'
miRNA:   3'- -GGUUGGa---------CAGCGUCGaGCUUgaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 32529 0.71 0.51904
Target:  5'- cCCGAUCUG-CGCGGgUCcGGGC-CGCCc -3'
miRNA:   3'- -GGUUGGACaGCGUCgAG-CUUGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 5680 0.81 0.126274
Target:  5'- gCCGACCg--CGCuGCgccgCGAACUCGCCg -3'
miRNA:   3'- -GGUUGGacaGCGuCGa---GCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 23665 0.79 0.181158
Target:  5'- gCCGACCaggGUCGCGGCcggUCGGGCggGCCg -3'
miRNA:   3'- -GGUUGGa--CAGCGUCG---AGCUUGagCGG- -5'
26328 5' -53.7 NC_005345.2 + 9424 0.77 0.230689
Target:  5'- aCCGGCUgucaaaggUGUCGUGGCcCGAGCUCGUCc -3'
miRNA:   3'- -GGUUGG--------ACAGCGUCGaGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 45744 0.75 0.283875
Target:  5'- cCCGccGCCUcUCuCAGCcCGAACUCGCCg -3'
miRNA:   3'- -GGU--UGGAcAGcGUCGaGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 10704 0.75 0.313916
Target:  5'- cCCGGCCUGUCcugcgGCAGCUCGu-Cg-GCCg -3'
miRNA:   3'- -GGUUGGACAG-----CGUCGAGCuuGagCGG- -5'
26328 5' -53.7 NC_005345.2 + 32193 0.74 0.346303
Target:  5'- -gAACCUgGUCGU-GUUCGGGCUCGUCa -3'
miRNA:   3'- ggUUGGA-CAGCGuCGAGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 17645 0.74 0.363371
Target:  5'- cCUGACCUG-CGCuucgauGCUCGGcgccuacgccgcGCUCGCCc -3'
miRNA:   3'- -GGUUGGACaGCGu-----CGAGCU------------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 8036 0.73 0.372121
Target:  5'- cUCGACCUcgCGCAGCUgcaCGAgcugcagaucaaGCUCGCCg -3'
miRNA:   3'- -GGUUGGAcaGCGUCGA---GCU------------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 26408 0.73 0.408529
Target:  5'- aCCGACCUGUCGgGGUUCcugaaaGAGCaCGCg -3'
miRNA:   3'- -GGUUGGACAGCgUCGAG------CUUGaGCGg -5'
26328 5' -53.7 NC_005345.2 + 5165 0.72 0.417972
Target:  5'- gCGACUcGUCGCcGCccUCGAagGCUCGCCc -3'
miRNA:   3'- gGUUGGaCAGCGuCG--AGCU--UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 29273 0.71 0.477281
Target:  5'- gCAACaucgGcgCGCGGUUCGAGgUCGCCc -3'
miRNA:   3'- gGUUGga--Ca-GCGUCGAGCUUgAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 44112 0.71 0.487571
Target:  5'- gCAGCCUgcgccacugGUCGUGGCUguggaucguaugCGGGCUCGUCa -3'
miRNA:   3'- gGUUGGA---------CAGCGUCGA------------GCUUGAGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.