Results 121 - 140 of 147 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 9424 | 0.77 | 0.230689 |
Target: 5'- aCCGGCUgucaaaggUGUCGUGGCcCGAGCUCGUCc -3' miRNA: 3'- -GGUUGG--------ACAGCGUCGaGCUUGAGCGG- -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 23665 | 0.79 | 0.181158 |
Target: 5'- gCCGACCaggGUCGCGGCcggUCGGGCggGCCg -3' miRNA: 3'- -GGUUGGa--CAGCGUCG---AGCUUGagCGG- -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 5680 | 0.81 | 0.126274 |
Target: 5'- gCCGACCg--CGCuGCgccgCGAACUCGCCg -3' miRNA: 3'- -GGUUGGacaGCGuCGa---GCUUGAGCGG- -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 34307 | 0.7 | 0.562167 |
Target: 5'- -aAGCa-GUCGCAGCUCGccgUCGCCc -3' miRNA: 3'- ggUUGgaCAGCGUCGAGCuugAGCGG- -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 26795 | 0.7 | 0.562167 |
Target: 5'- gCCGgcGCCgcGUCGCAGg-CGcuGCUCGCCg -3' miRNA: 3'- -GGU--UGGa-CAGCGUCgaGCu-UGAGCGG- -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 28543 | 0.68 | 0.650598 |
Target: 5'- aCGAUCaGUCGUGGCUCG-GCUcCGCg -3' miRNA: 3'- gGUUGGaCAGCGUCGAGCuUGA-GCGg -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 1336 | 0.68 | 0.650598 |
Target: 5'- gCCGGCCggGUCGCGGU---AACgCGCCu -3' miRNA: 3'- -GGUUGGa-CAGCGUCGagcUUGaGCGG- -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 11372 | 0.68 | 0.650598 |
Target: 5'- gCAGCCccgGUCGCGGCcgccugcgggCGAgcaGCUCGaCCu -3' miRNA: 3'- gGUUGGa--CAGCGUCGa---------GCU---UGAGC-GG- -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 36798 | 0.69 | 0.639499 |
Target: 5'- aCAGCCgcagCGCAGCUgaCGAAg-CGCCu -3' miRNA: 3'- gGUUGGaca-GCGUCGA--GCUUgaGCGG- -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 40386 | 0.69 | 0.632837 |
Target: 5'- cUCAuCCUG-CGCAGCcucccCGAugcugcagucgucgcGCUCGCCa -3' miRNA: 3'- -GGUuGGACaGCGUCGa----GCU---------------UGAGCGG- -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 29734 | 0.69 | 0.628394 |
Target: 5'- aCCGACgCgg-CGCAGCcgacCGAGCUCGgCg -3' miRNA: 3'- -GGUUG-GacaGCGUCGa---GCUUGAGCgG- -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 34829 | 0.69 | 0.616183 |
Target: 5'- aUCGGCCUGaucaucaccgggaUCGCGgcGCUCGugacccuGCUCGUCg -3' miRNA: 3'- -GGUUGGAC-------------AGCGU--CGAGCu------UGAGCGG- -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 31574 | 0.69 | 0.615073 |
Target: 5'- aCGACCUGaUGCAGCUCugccgggcccuGCUCGgCg -3' miRNA: 3'- gGUUGGACaGCGUCGAGcu---------UGAGCgG- -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 43546 | 0.69 | 0.606204 |
Target: 5'- gCCGAgCUcGUCGCcgacaAGCUCGccgaccgcCUCGCCa -3' miRNA: 3'- -GGUUgGA-CAGCG-----UCGAGCuu------GAGCGG- -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 43973 | 0.69 | 0.595138 |
Target: 5'- gCAGCCcg--GCGGCUCGcccGACUCGUCg -3' miRNA: 3'- gGUUGGacagCGUCGAGC---UUGAGCGG- -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 16490 | 0.7 | 0.584104 |
Target: 5'- aUCGuCCUGcUCGC-GCUCGAccugcuGCUCGCg -3' miRNA: 3'- -GGUuGGAC-AGCGuCGAGCU------UGAGCGg -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 45699 | 0.7 | 0.584104 |
Target: 5'- aCAGCCcG-CGCgAGCUCGGggcccGCaUCGCCg -3' miRNA: 3'- gGUUGGaCaGCG-UCGAGCU-----UG-AGCGG- -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 46647 | 0.7 | 0.584104 |
Target: 5'- gCCAGCggaacggCGCAGCggcguguacaUCGAGCUCGCUc -3' miRNA: 3'- -GGUUGgaca---GCGUCG----------AGCUUGAGCGG- -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 8968 | 0.7 | 0.573111 |
Target: 5'- cUCGACCUGUCGCuccGUcgaCGGGCgugUGCCu -3' miRNA: 3'- -GGUUGGACAGCGu--CGa--GCUUGa--GCGG- -5' |
|||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 29047 | 0.7 | 0.562167 |
Target: 5'- uUCGAguuUCUG-CGUGGCggcggCGGGCUCGCCg -3' miRNA: 3'- -GGUU---GGACaGCGUCGa----GCUUGAGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home