miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26329 3' -58.9 NC_005345.2 + 2995 0.66 0.491672
Target:  5'- cGUC--GGCGGUacGGGCGGCCGA-GGc- -3'
miRNA:   3'- -UAGucUCGCCA--CCCGCUGGCUaCCac -5'
26329 3' -58.9 NC_005345.2 + 13494 0.66 0.471457
Target:  5'- cGUCGGuGCGGUGGcGCGGCgagcacccguCGAUcGUGu -3'
miRNA:   3'- -UAGUCuCGCCACC-CGCUG----------GCUAcCAC- -5'
26329 3' -58.9 NC_005345.2 + 23454 0.66 0.451672
Target:  5'- ---cGAGUGGUGGGCGAU--GUGGa- -3'
miRNA:   3'- uaguCUCGCCACCCGCUGgcUACCac -5'
26329 3' -58.9 NC_005345.2 + 35222 0.67 0.43235
Target:  5'- uUCAG-GCGGccgUGGGCGGCugguagucguCGAUGGg- -3'
miRNA:   3'- uAGUCuCGCC---ACCCGCUG----------GCUACCac -5'
26329 3' -58.9 NC_005345.2 + 10151 0.67 0.395201
Target:  5'- uUCGGGGUGGggaUGGGCGcagACgCGAcGGUGg -3'
miRNA:   3'- uAGUCUCGCC---ACCCGC---UG-GCUaCCAC- -5'
26329 3' -58.9 NC_005345.2 + 33371 0.67 0.386242
Target:  5'- gGUgGGGGCGGUGGcGCGGCCcc-GGa- -3'
miRNA:   3'- -UAgUCUCGCCACC-CGCUGGcuaCCac -5'
26329 3' -58.9 NC_005345.2 + 35006 0.68 0.359331
Target:  5'- -cCGGGGCGcugcggcggccacGUGGGggcggGACCGGUGGUGu -3'
miRNA:   3'- uaGUCUCGC-------------CACCCg----CUGGCUACCAC- -5'
26329 3' -58.9 NC_005345.2 + 48757 0.69 0.311829
Target:  5'- -aCAuGGGCGGaccUGGGCaACCGAUGGa- -3'
miRNA:   3'- uaGU-CUCGCC---ACCCGcUGGCUACCac -5'
26329 3' -58.9 NC_005345.2 + 6531 0.69 0.311829
Target:  5'- -aCGGGGCGGggcgGGGCGgGgCGGUGGg- -3'
miRNA:   3'- uaGUCUCGCCa---CCCGC-UgGCUACCac -5'
26329 3' -58.9 NC_005345.2 + 33430 0.69 0.311829
Target:  5'- -gCAGGGUGGcGGGCGGCCcgcaaGGUGu -3'
miRNA:   3'- uaGUCUCGCCaCCCGCUGGcua--CCAC- -5'
26329 3' -58.9 NC_005345.2 + 35773 0.69 0.289566
Target:  5'- -gCGGGGCGGUGGGU--UCGGUGGc- -3'
miRNA:   3'- uaGUCUCGCCACCCGcuGGCUACCac -5'
26329 3' -58.9 NC_005345.2 + 45567 0.7 0.282427
Target:  5'- gGUCGGGGCGGgccGGuuGCGGCCGggGGc- -3'
miRNA:   3'- -UAGUCUCGCCa--CC--CGCUGGCuaCCac -5'
26329 3' -58.9 NC_005345.2 + 351 1.07 0.000514
Target:  5'- aAUCAGAGCGGUGGGCGACCGAUGGUGg -3'
miRNA:   3'- -UAGUCUCGCCACCCGCUGGCUACCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.