miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26329 5' -57.9 NC_005345.2 + 48789 0.66 0.536184
Target:  5'- aUGCguccaCCAUCGGUcGCCCAccgcucugauucGGUCagagcggaGCCg -3'
miRNA:   3'- -AUGa----GGUAGCCAaCGGGU------------CCAGg-------CGG- -5'
26329 5' -57.9 NC_005345.2 + 29069 0.66 0.519312
Target:  5'- cUACUgCC-UCGGUgUGCCCGGGgugggcuucgagggcUCCGUg -3'
miRNA:   3'- -AUGA-GGuAGCCA-ACGGGUCC---------------AGGCGg -5'
26329 5' -57.9 NC_005345.2 + 20762 0.66 0.515127
Target:  5'- cUGCcgCCGcggCGGcgcgUGCCCuGGuaUCCGCCg -3'
miRNA:   3'- -AUGa-GGUa--GCCa---ACGGGuCC--AGGCGG- -5'
26329 5' -57.9 NC_005345.2 + 4332 0.66 0.515127
Target:  5'- -uCUCgaCAUCGGccgaGCCgGGGUCCuGCCu -3'
miRNA:   3'- auGAG--GUAGCCaa--CGGgUCCAGG-CGG- -5'
26329 5' -57.9 NC_005345.2 + 30075 0.66 0.515127
Target:  5'- aGCU-CAUCGGcgagcacgGCCCcgagacggccGGGUUCGCCg -3'
miRNA:   3'- aUGAgGUAGCCaa------CGGG----------UCCAGGCGG- -5'
26329 5' -57.9 NC_005345.2 + 33263 0.67 0.484198
Target:  5'- gUACagC-UCGG-UGCCCGGGUCCauGUCg -3'
miRNA:   3'- -AUGagGuAGCCaACGGGUCCAGG--CGG- -5'
26329 5' -57.9 NC_005345.2 + 25525 0.67 0.454188
Target:  5'- aACaCCAUgCGcagccgUGCCC-GGUCCGCCg -3'
miRNA:   3'- aUGaGGUA-GCca----ACGGGuCCAGGCGG- -5'
26329 5' -57.9 NC_005345.2 + 9964 0.68 0.434751
Target:  5'- gGC-CCGgguUCGG--GCUgGGGUCCGCCu -3'
miRNA:   3'- aUGaGGU---AGCCaaCGGgUCCAGGCGG- -5'
26329 5' -57.9 NC_005345.2 + 18866 0.68 0.434751
Target:  5'- cUACUCCuUCGGcUGCUCGGGcUCgacgaGCCc -3'
miRNA:   3'- -AUGAGGuAGCCaACGGGUCC-AGg----CGG- -5'
26329 5' -57.9 NC_005345.2 + 911 0.68 0.388355
Target:  5'- aUGCUUCGcCGGcgccucgccaaUGUCCAGGUCgGCCg -3'
miRNA:   3'- -AUGAGGUaGCCa----------ACGGGUCCAGgCGG- -5'
26329 5' -57.9 NC_005345.2 + 10647 0.69 0.353656
Target:  5'- gGCUcgCCAU-GGUcGCCCGGGUCgGCg -3'
miRNA:   3'- aUGA--GGUAgCCAaCGGGUCCAGgCGg -5'
26329 5' -57.9 NC_005345.2 + 5632 0.69 0.353656
Target:  5'- cGCUCCG-CGa--GCgCCGGGUUCGCCg -3'
miRNA:   3'- aUGAGGUaGCcaaCG-GGUCCAGGCGG- -5'
26329 5' -57.9 NC_005345.2 + 4609 0.69 0.345331
Target:  5'- cGgUCCuguUCccGUUGCCCGGGUUCGCUc -3'
miRNA:   3'- aUgAGGu--AGc-CAACGGGUCCAGGCGG- -5'
26329 5' -57.9 NC_005345.2 + 27623 0.7 0.329105
Target:  5'- gGCgagAUCGGUccgcUGCUCGcGGUCCGCCg -3'
miRNA:   3'- aUGaggUAGCCA----ACGGGU-CCAGGCGG- -5'
26329 5' -57.9 NC_005345.2 + 43482 0.7 0.321206
Target:  5'- aGCgCgGUCGGcucgGUCCGGGcCCGCCg -3'
miRNA:   3'- aUGaGgUAGCCaa--CGGGUCCaGGCGG- -5'
26329 5' -57.9 NC_005345.2 + 39497 0.7 0.305836
Target:  5'- cGCgCCAU-GGUUGCCCGGGUgC-CCg -3'
miRNA:   3'- aUGaGGUAgCCAACGGGUCCAgGcGG- -5'
26329 5' -57.9 NC_005345.2 + 5437 0.7 0.291036
Target:  5'- -uCUUCggCGGc-GCCCGGGUCgGCCg -3'
miRNA:   3'- auGAGGuaGCCaaCGGGUCCAGgCGG- -5'
26329 5' -57.9 NC_005345.2 + 35969 0.71 0.276803
Target:  5'- cGCUCgggccgguCAUCGGUUGUCCu--UCCGCCg -3'
miRNA:   3'- aUGAG--------GUAGCCAACGGGuccAGGCGG- -5'
26329 5' -57.9 NC_005345.2 + 4459 0.72 0.249371
Target:  5'- gGCUCCggCGGggGCCCGGcggccguGUCCGgCu -3'
miRNA:   3'- aUGAGGuaGCCaaCGGGUC-------CAGGCgG- -5'
26329 5' -57.9 NC_005345.2 + 18635 0.72 0.243658
Target:  5'- --gUCCGcugcCGGUacccGCCCGGGUUCGCCa -3'
miRNA:   3'- augAGGUa---GCCAa---CGGGUCCAGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.