miRNA display CGI

Results 1 - 11 of 11 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
2633	3'	-56.5	NC_001491.2	+	36155	0.66	0.89131
	Target:  5'- --cUCCCGCCUCcauCCGCUgaCGCUgaacCCCg -3' miRNA:   3'- cacAGGGUGGAGc--GGUGA--GUGAa---GGG- -5'
2633	3'	-56.5	NC_001491.2	+	3454	0.66	0.870275
	Target:  5'- -aGUCCCcgaggaGCCUgGcCCGCUCGaccaggUCCCu -3' miRNA:   3'- caCAGGG------UGGAgC-GGUGAGUga----AGGG- -5'
2633	3'	-56.5	NC_001491.2	+	109963	0.68	0.81408
	Target:  5'- -aGUCCaGCCUCGCCA---GCU-CCCg -3' miRNA:   3'- caCAGGgUGGAGCGGUgagUGAaGGG- -5'
2633	3'	-56.5	NC_001491.2	+	76241	0.69	0.727588
	Target:  5'- --cUCCCGCCgCGCCGCcgccgcagcagcccUCGCU-CCCg -3' miRNA:   3'- cacAGGGUGGaGCGGUG--------------AGUGAaGGG- -5'
2633	3'	-56.5	NC_001491.2	+	76177	0.69	0.727588
	Target:  5'- --cUCCCGCCgCGCCGCcgccgcagcagcccUCGCU-CCCg -3' miRNA:   3'- cacAGGGUGGaGCGGUG--------------AGUGAaGGG- -5'
2633	3'	-56.5	NC_001491.2	+	76113	0.69	0.727588
	Target:  5'- --cUCCCGCCgCGCCGCcgccgcagcagcccUCGCU-CCCg -3' miRNA:   3'- cacAGGGUGGaGCGGUG--------------AGUGAaGGG- -5'
2633	3'	-56.5	NC_001491.2	+	76049	0.69	0.727588
	Target:  5'- --cUCCCGCCgCGCCGCcgccgcagcagcccUCGCU-CCCg -3' miRNA:   3'- cacAGGGUGGaGCGGUG--------------AGUGAaGGG- -5'
2633	3'	-56.5	NC_001491.2	+	75985	0.69	0.727588
	Target:  5'- --cUCCCGCCgCGCCGCcgccgcagcagcccUCGCU-CCCg -3' miRNA:   3'- cacAGGGUGGaGCGGUG--------------AGUGAaGGG- -5'
2633	3'	-56.5	NC_001491.2	+	84864	0.71	0.609582
	Target:  5'- -gGUCCUGCC-CGUCACUCAac-CCCa -3' miRNA:   3'- caCAGGGUGGaGCGGUGAGUgaaGGG- -5'
2633	3'	-56.5	NC_001491.2	+	33990	0.74	0.481174
	Target:  5'- cGUGUCCCugCUgGCCccaccgACUCGg-UCCCa -3' miRNA:   3'- -CACAGGGugGAgCGG------UGAGUgaAGGG- -5'
2633	3'	-56.5	NC_001491.2	+	142709	0.98	0.015069
	Target:  5'- gGUGU-CCACCUCGCCACUCACUUCCCc -3' miRNA:   3'- -CACAgGGUGGAGCGGUGAGUGAAGGG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home