miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2633 3' -56.5 NC_001491.2 + 36155 0.66 0.89131
Target:  5'- --cUCCCGCCUCcauCCGCUgaCGCUgaacCCCg -3'
miRNA:   3'- cacAGGGUGGAGc--GGUGA--GUGAa---GGG- -5'
2633 3' -56.5 NC_001491.2 + 3454 0.66 0.870275
Target:  5'- -aGUCCCcgaggaGCCUgGcCCGCUCGaccaggUCCCu -3'
miRNA:   3'- caCAGGG------UGGAgC-GGUGAGUga----AGGG- -5'
2633 3' -56.5 NC_001491.2 + 109963 0.68 0.81408
Target:  5'- -aGUCCaGCCUCGCCA---GCU-CCCg -3'
miRNA:   3'- caCAGGgUGGAGCGGUgagUGAaGGG- -5'
2633 3' -56.5 NC_001491.2 + 75985 0.69 0.727588
Target:  5'- --cUCCCGCCgCGCCGCcgccgcagcagcccUCGCU-CCCg -3'
miRNA:   3'- cacAGGGUGGaGCGGUG--------------AGUGAaGGG- -5'
2633 3' -56.5 NC_001491.2 + 76049 0.69 0.727588
Target:  5'- --cUCCCGCCgCGCCGCcgccgcagcagcccUCGCU-CCCg -3'
miRNA:   3'- cacAGGGUGGaGCGGUG--------------AGUGAaGGG- -5'
2633 3' -56.5 NC_001491.2 + 76113 0.69 0.727588
Target:  5'- --cUCCCGCCgCGCCGCcgccgcagcagcccUCGCU-CCCg -3'
miRNA:   3'- cacAGGGUGGaGCGGUG--------------AGUGAaGGG- -5'
2633 3' -56.5 NC_001491.2 + 76177 0.69 0.727588
Target:  5'- --cUCCCGCCgCGCCGCcgccgcagcagcccUCGCU-CCCg -3'
miRNA:   3'- cacAGGGUGGaGCGGUG--------------AGUGAaGGG- -5'
2633 3' -56.5 NC_001491.2 + 76241 0.69 0.727588
Target:  5'- --cUCCCGCCgCGCCGCcgccgcagcagcccUCGCU-CCCg -3'
miRNA:   3'- cacAGGGUGGaGCGGUG--------------AGUGAaGGG- -5'
2633 3' -56.5 NC_001491.2 + 84864 0.71 0.609582
Target:  5'- -gGUCCUGCC-CGUCACUCAac-CCCa -3'
miRNA:   3'- caCAGGGUGGaGCGGUGAGUgaaGGG- -5'
2633 3' -56.5 NC_001491.2 + 33990 0.74 0.481174
Target:  5'- cGUGUCCCugCUgGCCccaccgACUCGg-UCCCa -3'
miRNA:   3'- -CACAGGGugGAgCGG------UGAGUgaAGGG- -5'
2633 3' -56.5 NC_001491.2 + 142709 0.98 0.015069
Target:  5'- gGUGU-CCACCUCGCCACUCACUUCCCc -3'
miRNA:   3'- -CACAgGGUGGAGCGGUGAGUGAAGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.