miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2633 5' -46.7 NC_001491.2 + 71274 0.66 0.999949
Target:  5'- aGCGggUAcgGAAC-GUUGGucgccuGGUACACg -3'
miRNA:   3'- -CGCuuAUagUUUGcCAACC------CCAUGUG- -5'
2633 5' -46.7 NC_001491.2 + 83601 0.66 0.999911
Target:  5'- cGCGAGgcaCAAucGCGcUUGGGGgACGCg -3'
miRNA:   3'- -CGCUUauaGUU--UGCcAACCCCaUGUG- -5'
2633 5' -46.7 NC_001491.2 + 80577 0.66 0.999911
Target:  5'- cGCGAGUAaaaaUCuacAGCGGaaGGGGgGCAUg -3'
miRNA:   3'- -CGCUUAU----AGu--UUGCCaaCCCCaUGUG- -5'
2633 5' -46.7 NC_001491.2 + 11213 0.66 0.999911
Target:  5'- aGCGGGgga-GAGCGGUaGGGGaaACGCc -3'
miRNA:   3'- -CGCUUauagUUUGCCAaCCCCa-UGUG- -5'
2633 5' -46.7 NC_001491.2 + 105969 0.68 0.999487
Target:  5'- gGCGGAUgcAUCAGAUGGcggaaGGGGaGCAg -3'
miRNA:   3'- -CGCUUA--UAGUUUGCCaa---CCCCaUGUg -5'
2633 5' -46.7 NC_001491.2 + 71155 0.68 0.999023
Target:  5'- uGCGAggGUCuGGCuGUccgGGGGUugGCg -3'
miRNA:   3'- -CGCUuaUAGuUUGcCAa--CCCCAugUG- -5'
2633 5' -46.7 NC_001491.2 + 30055 0.68 0.999023
Target:  5'- cGUGuuacGUCGAugGGgUGGGGccgGCGCg -3'
miRNA:   3'- -CGCuua-UAGUUugCCaACCCCa--UGUG- -5'
2633 5' -46.7 NC_001491.2 + 63466 0.7 0.995782
Target:  5'- -gGggUuaguuGGCGGUUGGGGgacgACGCg -3'
miRNA:   3'- cgCuuAuagu-UUGCCAACCCCa---UGUG- -5'
2633 5' -46.7 NC_001491.2 + 63100 0.7 0.995355
Target:  5'- -gGGAUGUCGGACGGUagcccaauaaacucGGGGUcuugaaACACg -3'
miRNA:   3'- cgCUUAUAGUUUGCCAa-------------CCCCA------UGUG- -5'
2633 5' -46.7 NC_001491.2 + 24644 0.7 0.995051
Target:  5'- gGCGGccGUCGGA-GGggGGGGaUGCGCg -3'
miRNA:   3'- -CGCUuaUAGUUUgCCaaCCCC-AUGUG- -5'
2633 5' -46.7 NC_001491.2 + 19700 0.72 0.980688
Target:  5'- uUGggUAUCAGcaaaGcUUGGGGUACGCg -3'
miRNA:   3'- cGCuuAUAGUUug--CcAACCCCAUGUG- -5'
2633 5' -46.7 NC_001491.2 + 67289 0.73 0.972982
Target:  5'- gGCGAGcgccGUCcuGCGGUUGGGGcACGg -3'
miRNA:   3'- -CGCUUa---UAGuuUGCCAACCCCaUGUg -5'
2633 5' -46.7 NC_001491.2 + 142745 1.14 0.011776
Target:  5'- gGCGAAUAUCAAACGGUUGGGGUACACa -3'
miRNA:   3'- -CGCUUAUAGUUUGCCAACCCCAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.