miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26331 3' -64.7 NC_005345.2 + 18673 0.66 0.237908
Target:  5'- cGGUGaCGGCGCCGacCGCuUUCGaCCCgGCg -3'
miRNA:   3'- -UCGC-GUCGCGGCa-GCG-GAGC-GGGgUG- -5'
26331 3' -64.7 NC_005345.2 + 11909 0.66 0.232052
Target:  5'- -aCGCcGUGgCGUCGaCCUCGC-CCACg -3'
miRNA:   3'- ucGCGuCGCgGCAGC-GGAGCGgGGUG- -5'
26331 3' -64.7 NC_005345.2 + 46357 0.66 0.232052
Target:  5'- gAGCGCA-CGCCGgCGCCgacaaGCCgUACc -3'
miRNA:   3'- -UCGCGUcGCGGCaGCGGag---CGGgGUG- -5'
26331 3' -64.7 NC_005345.2 + 5849 0.66 0.231473
Target:  5'- cGGCuGUGGCG-CGUCGaCCUCGCCgaggacgucgucgCCACc -3'
miRNA:   3'- -UCG-CGUCGCgGCAGC-GGAGCGG-------------GGUG- -5'
26331 3' -64.7 NC_005345.2 + 2786 0.66 0.230895
Target:  5'- cGCGUccAGUGaucuucgaaaCCGUCGCCaggcugaucccgCGCCCCGCc -3'
miRNA:   3'- uCGCG--UCGC----------GGCAGCGGa-----------GCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 26797 0.66 0.226317
Target:  5'- cGGCGCcGCGUCGcaggCGCugCUCGCCgCAUc -3'
miRNA:   3'- -UCGCGuCGCGGCa---GCG--GAGCGGgGUG- -5'
26331 3' -64.7 NC_005345.2 + 11899 0.66 0.226317
Target:  5'- cGCGaCcGcCGCCGUCGCC-CGCUaCUACg -3'
miRNA:   3'- uCGC-GuC-GCGGCAGCGGaGCGG-GGUG- -5'
26331 3' -64.7 NC_005345.2 + 37948 0.66 0.226317
Target:  5'- -cCGCcGCGaCCGUCcgggccugaGCCUCGCCggCCGCg -3'
miRNA:   3'- ucGCGuCGC-GGCAG---------CGGAGCGG--GGUG- -5'
26331 3' -64.7 NC_005345.2 + 45143 0.66 0.226317
Target:  5'- -uCGguGCGCCGa-GCCagUCGgCCCACg -3'
miRNA:   3'- ucGCguCGCGGCagCGG--AGCgGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 22165 0.66 0.226317
Target:  5'- uGGCgaGCAGCGCCGgCGCUgggaucggguUCGUCCUcgACg -3'
miRNA:   3'- -UCG--CGUCGCGGCaGCGG----------AGCGGGG--UG- -5'
26331 3' -64.7 NC_005345.2 + 33233 0.66 0.225751
Target:  5'- uGCGCGGCGUCGagguucaUCGCgagcaggugCUCGgucaguCCCCACa -3'
miRNA:   3'- uCGCGUCGCGGC-------AGCG---------GAGC------GGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 17698 0.67 0.220704
Target:  5'- -cCGCAcC-CCGgCGCCUCGCaCCCGCg -3'
miRNA:   3'- ucGCGUcGcGGCaGCGGAGCG-GGGUG- -5'
26331 3' -64.7 NC_005345.2 + 13642 0.67 0.220704
Target:  5'- cGGCGCGGCGUgagCGCCgacgagcagCGCgCCGCc -3'
miRNA:   3'- -UCGCGUCGCGgcaGCGGa--------GCGgGGUG- -5'
26331 3' -64.7 NC_005345.2 + 46422 0.67 0.220704
Target:  5'- cGGCGCcggcguGCGCuCGaUCGCCU-GCUCCAg -3'
miRNA:   3'- -UCGCGu-----CGCG-GC-AGCGGAgCGGGGUg -5'
26331 3' -64.7 NC_005345.2 + 23728 0.67 0.220704
Target:  5'- cGCGacccugguCGGCGCCGUcCGCCUCGgCgaaCACc -3'
miRNA:   3'- uCGC--------GUCGCGGCA-GCGGAGCgGg--GUG- -5'
26331 3' -64.7 NC_005345.2 + 17962 0.67 0.215209
Target:  5'- cGCGCAccCGCCG-CGCCcgaguaCGCaCCCGCa -3'
miRNA:   3'- uCGCGUc-GCGGCaGCGGa-----GCG-GGGUG- -5'
26331 3' -64.7 NC_005345.2 + 27142 0.67 0.215209
Target:  5'- cGGCGUcgagcugcccgaGGCGCUG-CGCggCGUCCCGCc -3'
miRNA:   3'- -UCGCG------------UCGCGGCaGCGgaGCGGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 36443 0.67 0.215209
Target:  5'- cGCGCuGUcCCGcuacggcucgcUCGCCUCGgCCUACa -3'
miRNA:   3'- uCGCGuCGcGGC-----------AGCGGAGCgGGGUG- -5'
26331 3' -64.7 NC_005345.2 + 18567 0.67 0.215209
Target:  5'- gAGCGCAGCGCCuUUGCCgaacgCGgCgaGCa -3'
miRNA:   3'- -UCGCGUCGCGGcAGCGGa----GCgGggUG- -5'
26331 3' -64.7 NC_005345.2 + 27348 0.67 0.215209
Target:  5'- gGGCGCGGUacuuccGCCGUCGgCU-GUCCgGCu -3'
miRNA:   3'- -UCGCGUCG------CGGCAGCgGAgCGGGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.