Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 26332 | 3' | -57 | NC_005345.2 | + | 37776 | 0.66 | 0.543496 |
|
Target: 5'- cAGCgggUGGAcggcgaaacucaAUGCgacGCUGCUgCUCGGc -3' miRNA: 3'- -UCGa--ACCU------------UGCGa--CGACGAgGAGCCa -5' |
|||||||
| 26332 | 3' | -57 | NC_005345.2 | + | 40829 | 0.67 | 0.511334 |
|
Target: 5'- cGCc-GGAACGCUGCUGCUgCgCGc- -3' miRNA: 3'- uCGaaCCUUGCGACGACGAgGaGCca -5' |
|||||||
| 26332 | 3' | -57 | NC_005345.2 | + | 47148 | 0.67 | 0.500787 |
|
Target: 5'- gAGCgagGGGGCGCUGUgagcGCcgCCUCGcGg -3' miRNA: 3'- -UCGaa-CCUUGCGACGa---CGa-GGAGC-Ca -5' |
|||||||
| 26332 | 3' | -57 | NC_005345.2 | + | 13735 | 0.67 | 0.490337 |
|
Target: 5'- cGGCgucgagGGcGGCGC-GCUGCUCgUCGGc -3' miRNA: 3'- -UCGaa----CC-UUGCGaCGACGAGgAGCCa -5' |
|||||||
| 26332 | 3' | -57 | NC_005345.2 | + | 14591 | 0.68 | 0.429961 |
|
Target: 5'- cGGCggucGGGGCGgUgcGCUGCUCC-CGGUc -3' miRNA: 3'- -UCGaa--CCUUGCgA--CGACGAGGaGCCA- -5' |
|||||||
| 26332 | 3' | -57 | NC_005345.2 | + | 20020 | 0.68 | 0.420326 |
|
Target: 5'- cAGCcccuucgagGGcGCGCUGCUGCUCgUCGu- -3' miRNA: 3'- -UCGaa-------CCuUGCGACGACGAGgAGCca -5' |
|||||||
| 26332 | 3' | -57 | NC_005345.2 | + | 9954 | 0.68 | 0.401454 |
|
Target: 5'- gAGUUcGGccCGCUGCUGCUCgUCGa- -3' miRNA: 3'- -UCGAaCCuuGCGACGACGAGgAGCca -5' |
|||||||
| 26332 | 3' | -57 | NC_005345.2 | + | 46466 | 0.7 | 0.31558 |
|
Target: 5'- cGCaugUGGAGCGCgccacGCgcgGCggCCUCGGUa -3' miRNA: 3'- uCGa--ACCUUGCGa----CGa--CGa-GGAGCCA- -5' |
|||||||
| 26332 | 3' | -57 | NC_005345.2 | + | 1969 | 1.08 | 0.0006 |
|
Target: 5'- cAGCUUGGAACGCUGCUGCUCCUCGGUg -3' miRNA: 3'- -UCGAACCUUGCGACGACGAGGAGCCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home