miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26332 5' -55.4 NC_005345.2 + 29623 0.66 0.676796
Target:  5'- cGGACGGGGcGAGCGGGaacaccugccUGaucacUUCCUCGc -3'
miRNA:   3'- cCUUGUCCCaCUCGUCC----------GC-----AAGGAGC- -5'
26332 5' -55.4 NC_005345.2 + 1202 0.66 0.654809
Target:  5'- uGGGACAGGGUGAucucgccacGCuucgggucGGCGUacgUCCguucgCGg -3'
miRNA:   3'- -CCUUGUCCCACU---------CGu-------CCGCA---AGGa----GC- -5'
26332 5' -55.4 NC_005345.2 + 14115 0.67 0.621697
Target:  5'- uGGuGCGGGcGUG-GCGGGUGUUgUUCa -3'
miRNA:   3'- -CCuUGUCC-CACuCGUCCGCAAgGAGc -5'
26332 5' -55.4 NC_005345.2 + 41273 0.67 0.610665
Target:  5'- gGGGACcggcGGGUGGGUgugcugGGGCcg-CCUCGg -3'
miRNA:   3'- -CCUUGu---CCCACUCG------UCCGcaaGGAGC- -5'
26332 5' -55.4 NC_005345.2 + 38730 0.67 0.610665
Target:  5'- uGGACGGuGGUauccGGGguGGCGacCCUCGc -3'
miRNA:   3'- cCUUGUC-CCA----CUCguCCGCaaGGAGC- -5'
26332 5' -55.4 NC_005345.2 + 18849 0.67 0.599651
Target:  5'- cGGGGCAGGc-GAGCAGGUGcgggCCgCGa -3'
miRNA:   3'- -CCUUGUCCcaCUCGUCCGCaa--GGaGC- -5'
26332 5' -55.4 NC_005345.2 + 44876 0.68 0.534453
Target:  5'- cGAGcCGGGGUccugccucGGGCGGGCGggCCgcUCGg -3'
miRNA:   3'- cCUU-GUCCCA--------CUCGUCCGCaaGG--AGC- -5'
26332 5' -55.4 NC_005345.2 + 39492 0.69 0.513245
Target:  5'- ---cCGGGGUcGAGCGGGUcggCCUCGa -3'
miRNA:   3'- ccuuGUCCCA-CUCGUCCGcaaGGAGC- -5'
26332 5' -55.4 NC_005345.2 + 10993 0.69 0.511143
Target:  5'- gGGAACGGGGacgcgcggaccgGuGCAGGCGUga-UCGa -3'
miRNA:   3'- -CCUUGUCCCa-----------CuCGUCCGCAaggAGC- -5'
26332 5' -55.4 NC_005345.2 + 19795 0.69 0.49239
Target:  5'- --cGCGGGcGUu-GCGGGCGUcgUCCUCGg -3'
miRNA:   3'- ccuUGUCC-CAcuCGUCCGCA--AGGAGC- -5'
26332 5' -55.4 NC_005345.2 + 15793 0.7 0.432372
Target:  5'- -cAGCAGGGUG-GCGGGCGgcCCg-- -3'
miRNA:   3'- ccUUGUCCCACuCGUCCGCaaGGagc -5'
26332 5' -55.4 NC_005345.2 + 36909 0.72 0.33357
Target:  5'- cGGGACcGGGUGAGCGGGUcaUCgccacggCUCGg -3'
miRNA:   3'- -CCUUGuCCCACUCGUCCGcaAG-------GAGC- -5'
26332 5' -55.4 NC_005345.2 + 40079 0.75 0.21679
Target:  5'- cGGAACAGGGUGAcccgagacaCGGGCGUguaggaCUCGg -3'
miRNA:   3'- -CCUUGUCCCACUc--------GUCCGCAag----GAGC- -5'
26332 5' -55.4 NC_005345.2 + 30417 0.76 0.194834
Target:  5'- cGGGCAGGGUGAcgGCGGcGCGggccugguagUCCUCGa -3'
miRNA:   3'- cCUUGUCCCACU--CGUC-CGCa---------AGGAGC- -5'
26332 5' -55.4 NC_005345.2 + 25606 0.76 0.184603
Target:  5'- aGAACGcc--GAGCAGGCGUUCCUCGa -3'
miRNA:   3'- cCUUGUcccaCUCGUCCGCAAGGAGC- -5'
26332 5' -55.4 NC_005345.2 + 2002 1.12 0.000535
Target:  5'- cGGAACAGGGUGAGCAGGCGUUCCUCGg -3'
miRNA:   3'- -CCUUGUCCCACUCGUCCGCAAGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.