Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26333 | 3' | -52.7 | NC_005345.2 | + | 36552 | 0.69 | 0.662523 |
Target: 5'- cCCGAGCUcgugCGCUucgGGgGCGgcGACACc -3' miRNA: 3'- -GGCUCGGa---GUGAa--CUgCGCaaCUGUG- -5' |
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26333 | 3' | -52.7 | NC_005345.2 | + | 26644 | 0.7 | 0.60637 |
Target: 5'- uUCGAGCCccUCACUgaacGACGCGaUGugcuCGCg -3' miRNA: 3'- -GGCUCGG--AGUGAa---CUGCGCaACu---GUG- -5' |
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26333 | 3' | -52.7 | NC_005345.2 | + | 33883 | 0.7 | 0.595168 |
Target: 5'- gCGAuGuCCUUACgcGGCGCGUUGAcCGCg -3' miRNA: 3'- gGCU-C-GGAGUGaaCUGCGCAACU-GUG- -5' |
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26333 | 3' | -52.7 | NC_005345.2 | + | 35322 | 0.71 | 0.561795 |
Target: 5'- gCCGAGCUUCcggGCgaucGGCGCGgccGGCGCg -3' miRNA: 3'- -GGCUCGGAG---UGaa--CUGCGCaa-CUGUG- -5' |
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26333 | 3' | -52.7 | NC_005345.2 | + | 26995 | 0.71 | 0.528952 |
Target: 5'- gUCGAGCCU-GCggGACGCG--GACGCg -3' miRNA: 3'- -GGCUCGGAgUGaaCUGCGCaaCUGUG- -5' |
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26333 | 3' | -52.7 | NC_005345.2 | + | 2139 | 0.73 | 0.425685 |
Target: 5'- gCCGcggcugcuGCCUCGCUUGccgagcuuccACGCGUUGAC-Cg -3' miRNA: 3'- -GGCu-------CGGAGUGAAC----------UGCGCAACUGuG- -5' |
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26333 | 3' | -52.7 | NC_005345.2 | + | 2484 | 1.12 | 0.001023 |
Target: 5'- aCCGAGCCUCACUUGACGCGUUGACACu -3' miRNA: 3'- -GGCUCGGAGUGAACUGCGCAACUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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