miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26333 3' -52.7 NC_005345.2 + 36552 0.69 0.662523
Target:  5'- cCCGAGCUcgugCGCUucgGGgGCGgcGACACc -3'
miRNA:   3'- -GGCUCGGa---GUGAa--CUgCGCaaCUGUG- -5'
26333 3' -52.7 NC_005345.2 + 26644 0.7 0.60637
Target:  5'- uUCGAGCCccUCACUgaacGACGCGaUGugcuCGCg -3'
miRNA:   3'- -GGCUCGG--AGUGAa---CUGCGCaACu---GUG- -5'
26333 3' -52.7 NC_005345.2 + 33883 0.7 0.595168
Target:  5'- gCGAuGuCCUUACgcGGCGCGUUGAcCGCg -3'
miRNA:   3'- gGCU-C-GGAGUGaaCUGCGCAACU-GUG- -5'
26333 3' -52.7 NC_005345.2 + 35322 0.71 0.561795
Target:  5'- gCCGAGCUUCcggGCgaucGGCGCGgccGGCGCg -3'
miRNA:   3'- -GGCUCGGAG---UGaa--CUGCGCaa-CUGUG- -5'
26333 3' -52.7 NC_005345.2 + 26995 0.71 0.528952
Target:  5'- gUCGAGCCU-GCggGACGCG--GACGCg -3'
miRNA:   3'- -GGCUCGGAgUGaaCUGCGCaaCUGUG- -5'
26333 3' -52.7 NC_005345.2 + 2139 0.73 0.425685
Target:  5'- gCCGcggcugcuGCCUCGCUUGccgagcuuccACGCGUUGAC-Cg -3'
miRNA:   3'- -GGCu-------CGGAGUGAAC----------UGCGCAACUGuG- -5'
26333 3' -52.7 NC_005345.2 + 2484 1.12 0.001023
Target:  5'- aCCGAGCCUCACUUGACGCGUUGACACu -3'
miRNA:   3'- -GGCUCGGAGUGAACUGCGCAACUGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.