miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26333 3' -52.7 NC_005345.2 + 22816 0.66 0.81104
Target:  5'- gCGGGUCUgACaUGGCGCGUcuGCAg -3'
miRNA:   3'- gGCUCGGAgUGaACUGCGCAacUGUg -5'
26333 3' -52.7 NC_005345.2 + 35322 0.71 0.561795
Target:  5'- gCCGAGCUUCcggGCgaucGGCGCGgccGGCGCg -3'
miRNA:   3'- -GGCUCGGAG---UGaa--CUGCGCaa-CUGUG- -5'
26333 3' -52.7 NC_005345.2 + 30168 0.69 0.662523
Target:  5'- gCCGAGgCUCggGCaucGACGCGU-GGCGCu -3'
miRNA:   3'- -GGCUCgGAG--UGaa-CUGCGCAaCUGUG- -5'
26333 3' -52.7 NC_005345.2 + 36552 0.69 0.662523
Target:  5'- cCCGAGCUcgugCGCUucgGGgGCGgcGACACc -3'
miRNA:   3'- -GGCUCGGa---GUGAa--CUgCGCaaCUGUG- -5'
26333 3' -52.7 NC_005345.2 + 154 0.69 0.684853
Target:  5'- gUGAGUCUCAgUgagGGgGUGUUGugGCa -3'
miRNA:   3'- gGCUCGGAGUgAa--CUgCGCAACugUG- -5'
26333 3' -52.7 NC_005345.2 + 7336 0.68 0.717924
Target:  5'- gCCGAGUCgCACgcggUGugGCccgcggUGGCGCa -3'
miRNA:   3'- -GGCUCGGaGUGa---ACugCGca----ACUGUG- -5'
26333 3' -52.7 NC_005345.2 + 46798 0.68 0.739549
Target:  5'- aCCGGGCUgcgccgccaagCACgcucgGACGCcgagucGUUGACGCa -3'
miRNA:   3'- -GGCUCGGa----------GUGaa---CUGCG------CAACUGUG- -5'
26333 3' -52.7 NC_005345.2 + 14852 0.67 0.760722
Target:  5'- gCCGGGCUgcagcgggCGCUcGACGCGgccGAgGCg -3'
miRNA:   3'- -GGCUCGGa-------GUGAaCUGCGCaa-CUgUG- -5'
26333 3' -52.7 NC_005345.2 + 42944 0.67 0.781345
Target:  5'- -aGAGCCUCGCggacgGGC-CGggcGGCACg -3'
miRNA:   3'- ggCUCGGAGUGaa---CUGcGCaa-CUGUG- -5'
26333 3' -52.7 NC_005345.2 + 26995 0.71 0.528952
Target:  5'- gUCGAGCCU-GCggGACGCG--GACGCg -3'
miRNA:   3'- -GGCUCGGAgUGaaCUGCGCaaCUGUG- -5'
26333 3' -52.7 NC_005345.2 + 2139 0.73 0.425685
Target:  5'- gCCGcggcugcuGCCUCGCUUGccgagcuuccACGCGUUGAC-Cg -3'
miRNA:   3'- -GGCu-------CGGAGUGAAC----------UGCGCAACUGuG- -5'
26333 3' -52.7 NC_005345.2 + 2484 1.12 0.001023
Target:  5'- aCCGAGCCUCACUUGACGCGUUGACACu -3'
miRNA:   3'- -GGCUCGGAGUGAACUGCGCAACUGUG- -5'
26333 3' -52.7 NC_005345.2 + 31592 0.66 0.81104
Target:  5'- gCCGGGCCcUGCUcGGCGCGgcccgcgGAuCGCa -3'
miRNA:   3'- -GGCUCGGaGUGAaCUGCGCaa-----CU-GUG- -5'
26333 3' -52.7 NC_005345.2 + 8401 0.66 0.81104
Target:  5'- aCGAGCCgcugccggUCgACggGGCGCGgcugGACGCc -3'
miRNA:   3'- gGCUCGG--------AG-UGaaCUGCGCaa--CUGUG- -5'
26333 3' -52.7 NC_005345.2 + 13619 0.66 0.835362
Target:  5'- cCCGAGCCcCGCgaggaaccggacGGCGCGgcgUGAgCGCc -3'
miRNA:   3'- -GGCUCGGaGUGaa----------CUGCGCa--ACU-GUG- -5'
26333 3' -52.7 NC_005345.2 + 37998 0.66 0.819618
Target:  5'- gCCGAGCUuggcaucacguggUCACUggUGGcCGCGUgGACGu -3'
miRNA:   3'- -GGCUCGG-------------AGUGA--ACU-GCGCAaCUGUg -5'
26333 3' -52.7 NC_005345.2 + 46697 0.66 0.833542
Target:  5'- aCUGggcaGGCCUaCACcggGACGCGUucgagagucuccgagUGGCACg -3'
miRNA:   3'- -GGC----UCGGA-GUGaa-CUGCGCA---------------ACUGUG- -5'
26333 3' -52.7 NC_005345.2 + 20755 0.66 0.808145
Target:  5'- aCGAuCCUCGCaggucaccgcguucUgUGACGCGUcacUGACGCa -3'
miRNA:   3'- gGCUcGGAGUG--------------A-ACUGCGCA---ACUGUG- -5'
26333 3' -52.7 NC_005345.2 + 16749 0.68 0.717924
Target:  5'- gCGAGCCg-GC-UGACaGCG-UGACGCg -3'
miRNA:   3'- gGCUCGGagUGaACUG-CGCaACUGUG- -5'
26333 3' -52.7 NC_005345.2 + 2101 0.69 0.673708
Target:  5'- gCCGGGCC-CGCUcGACGag--GACGCc -3'
miRNA:   3'- -GGCUCGGaGUGAaCUGCgcaaCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.