miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26333 5' -59.5 NC_005345.2 + 39870 0.66 0.479093
Target:  5'- --aUGUCcACGGUGAUcaGGGGCagcguccacACCCGc -3'
miRNA:   3'- uacACAGuUGCCGCUG--CCCCG---------UGGGC- -5'
26333 5' -59.5 NC_005345.2 + 22860 0.66 0.479093
Target:  5'- -gGUGUCGACGaCGAgcGGGCGCCg- -3'
miRNA:   3'- uaCACAGUUGCcGCUgcCCCGUGGgc -5'
26333 5' -59.5 NC_005345.2 + 2680 0.66 0.479093
Target:  5'- ---gGUCGAU-GCGGCGGGGCgcgggaucaGCCUGg -3'
miRNA:   3'- uacaCAGUUGcCGCUGCCCCG---------UGGGC- -5'
26333 5' -59.5 NC_005345.2 + 18372 0.66 0.479093
Target:  5'- -aGUG-CGACGGCGaggacgaacagcGCGcGGGUGCuCCGg -3'
miRNA:   3'- uaCACaGUUGCCGC------------UGC-CCCGUG-GGC- -5'
26333 5' -59.5 NC_005345.2 + 43801 0.66 0.479093
Target:  5'- -cGUGaCGGCGGCGACGacGGCGuuCGu -3'
miRNA:   3'- uaCACaGUUGCCGCUGCc-CCGUggGC- -5'
26333 5' -59.5 NC_005345.2 + 35942 0.66 0.476104
Target:  5'- ---gGUCGGCGGCGucgucaugaGCGGGGUugacuuccugucggACCCc -3'
miRNA:   3'- uacaCAGUUGCCGC---------UGCCCCG--------------UGGGc -5'
26333 5' -59.5 NC_005345.2 + 15353 0.66 0.469166
Target:  5'- gGUGUG-CGgcgaaguagGCGGCGACggcagcgcgGGGGUacuugGCCCGg -3'
miRNA:   3'- -UACACaGU---------UGCCGCUG---------CCCCG-----UGGGC- -5'
26333 5' -59.5 NC_005345.2 + 46689 0.66 0.465225
Target:  5'- -cGUGggggguuuccacgCggUGGCGACGGcGaGUGCCCGg -3'
miRNA:   3'- uaCACa------------GuuGCCGCUGCC-C-CGUGGGC- -5'
26333 5' -59.5 NC_005345.2 + 38716 0.66 0.459346
Target:  5'- -aGgggGUCGcCGGCugGACGGuGGUAUCCGg -3'
miRNA:   3'- uaCa--CAGUuGCCG--CUGCC-CCGUGGGC- -5'
26333 5' -59.5 NC_005345.2 + 9154 0.66 0.459346
Target:  5'- ---gGUUGACGGCG-CGGGuGCACgggCCGg -3'
miRNA:   3'- uacaCAGUUGCCGCuGCCC-CGUG---GGC- -5'
26333 5' -59.5 NC_005345.2 + 28836 0.66 0.459346
Target:  5'- ---gGUCGAUGGUGuugacCGcGGGCGCCUGc -3'
miRNA:   3'- uacaCAGUUGCCGCu----GC-CCCGUGGGC- -5'
26333 5' -59.5 NC_005345.2 + 16348 0.66 0.449635
Target:  5'- ---cGUCGGCGGCaucGCGGccGGCGCCgCGg -3'
miRNA:   3'- uacaCAGUUGCCGc--UGCC--CCGUGG-GC- -5'
26333 5' -59.5 NC_005345.2 + 9904 0.66 0.440039
Target:  5'- ----cUCGGCGGCGAgcaggaaugacCGGGGCAgUCGg -3'
miRNA:   3'- uacacAGUUGCCGCU-----------GCCCCGUgGGC- -5'
26333 5' -59.5 NC_005345.2 + 48132 0.66 0.430561
Target:  5'- ----cUCGACGGCGACGagcGGuGCGCgCCGg -3'
miRNA:   3'- uacacAGUUGCCGCUGC---CC-CGUG-GGC- -5'
26333 5' -59.5 NC_005345.2 + 48973 0.66 0.430561
Target:  5'- cAUGcGUCuGACGcGUGugGGGaGCACgCCGg -3'
miRNA:   3'- -UACaCAG-UUGC-CGCugCCC-CGUG-GGC- -5'
26333 5' -59.5 NC_005345.2 + 27564 0.67 0.421204
Target:  5'- ---cGUCGGacccCGGCGGCcGGGCGCCgGa -3'
miRNA:   3'- uacaCAGUU----GCCGCUGcCCCGUGGgC- -5'
26333 5' -59.5 NC_005345.2 + 3386 0.67 0.421204
Target:  5'- -cGUGcaCGGCGGCGGCGcGGGCGacgaUCGu -3'
miRNA:   3'- uaCACa-GUUGCCGCUGC-CCCGUg---GGC- -5'
26333 5' -59.5 NC_005345.2 + 45871 0.67 0.421204
Target:  5'- -cGUGgacggcacgCAGCuGCGcACGGGGUACCuCGg -3'
miRNA:   3'- uaCACa--------GUUGcCGC-UGCCCCGUGG-GC- -5'
26333 5' -59.5 NC_005345.2 + 45782 0.67 0.421204
Target:  5'- ------gGGCGGCGAUGcGGGC-CCCGa -3'
miRNA:   3'- uacacagUUGCCGCUGC-CCCGuGGGC- -5'
26333 5' -59.5 NC_005345.2 + 30116 0.67 0.421204
Target:  5'- -gGUGUCGuCGGCccacGCGuGGGCGCCg- -3'
miRNA:   3'- uaCACAGUuGCCGc---UGC-CCCGUGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.