miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26334 5' -50.7 NC_005345.2 + 6936 0.66 0.918343
Target:  5'- aGCGgcaUCGGCGACUucccGuCCGUCGccGCGAGg -3'
miRNA:   3'- -CGC---AGUCGUUGAc---CuGGCAGU--UGUUC- -5'
26334 5' -50.7 NC_005345.2 + 36273 0.66 0.918343
Target:  5'- aGCGgCGGCAACccGGCCGcgaUCAACAAc -3'
miRNA:   3'- -CGCaGUCGUUGacCUGGC---AGUUGUUc -5'
26334 5' -50.7 NC_005345.2 + 19727 0.66 0.911833
Target:  5'- uCGUCGGC-GCUGaACaCGUCGGCAu- -3'
miRNA:   3'- cGCAGUCGuUGACcUG-GCAGUUGUuc -5'
26334 5' -50.7 NC_005345.2 + 25531 0.66 0.905027
Target:  5'- uGCGUaAGCGGCagGGGCagcUCGACGAGu -3'
miRNA:   3'- -CGCAgUCGUUGa-CCUGgc-AGUUGUUC- -5'
26334 5' -50.7 NC_005345.2 + 19879 0.66 0.897928
Target:  5'- gGUGUCAGC-GCUcGucGCCGUCGGCGu- -3'
miRNA:   3'- -CGCAGUCGuUGAcC--UGGCAGUUGUuc -5'
26334 5' -50.7 NC_005345.2 + 30695 0.67 0.874922
Target:  5'- gGCGUCGGCGuccgGGGCgGUCugauCGGGc -3'
miRNA:   3'- -CGCAGUCGUuga-CCUGgCAGuu--GUUC- -5'
26334 5' -50.7 NC_005345.2 + 1922 0.67 0.866702
Target:  5'- gGCGUCGGCuacuGCuuguUGGACuCGUuCAGCGc- -3'
miRNA:   3'- -CGCAGUCGu---UG----ACCUG-GCA-GUUGUuc -5'
26334 5' -50.7 NC_005345.2 + 45102 0.67 0.866702
Target:  5'- cGUGUCGGC-GCUcgucGGcGCCGUCGucgcACAGGg -3'
miRNA:   3'- -CGCAGUCGuUGA----CC-UGGCAGU----UGUUC- -5'
26334 5' -50.7 NC_005345.2 + 19343 0.67 0.866702
Target:  5'- -gGUgGGCGA--GGACgGUCGACAGGu -3'
miRNA:   3'- cgCAgUCGUUgaCCUGgCAGUUGUUC- -5'
26334 5' -50.7 NC_005345.2 + 20424 0.67 0.864184
Target:  5'- cGCGUCcccgucgcucccacAGCAcCUuGACCGUgGGCAGGu -3'
miRNA:   3'- -CGCAG--------------UCGUuGAcCUGGCAgUUGUUC- -5'
26334 5' -50.7 NC_005345.2 + 22740 0.67 0.858218
Target:  5'- aCGaCgAGCGACUGcccGACCGUCcGCAGGu -3'
miRNA:   3'- cGCaG-UCGUUGAC---CUGGCAGuUGUUC- -5'
26334 5' -50.7 NC_005345.2 + 11783 0.67 0.849479
Target:  5'- cGCGgCGGCGgcccGCUGGucgGCCGUCGAUc-- -3'
miRNA:   3'- -CGCaGUCGU----UGACC---UGGCAGUUGuuc -5'
26334 5' -50.7 NC_005345.2 + 11991 0.68 0.840494
Target:  5'- cGUGUCGGCGGCgu-GCCGUagUAGCGGGc -3'
miRNA:   3'- -CGCAGUCGUUGaccUGGCA--GUUGUUC- -5'
26334 5' -50.7 NC_005345.2 + 22115 0.68 0.840494
Target:  5'- cGCgGUCGGCucgugagcucGGCcgGGACCGUcCGGCGGGc -3'
miRNA:   3'- -CG-CAGUCG----------UUGa-CCUGGCA-GUUGUUC- -5'
26334 5' -50.7 NC_005345.2 + 22212 0.68 0.831272
Target:  5'- aGCGUCgcGGUAGC-GcGACCacGUCGACGAGu -3'
miRNA:   3'- -CGCAG--UCGUUGaC-CUGG--CAGUUGUUC- -5'
26334 5' -50.7 NC_005345.2 + 14473 0.68 0.821824
Target:  5'- gGCGUCGGCGACgugcaGCCGgaUCGGCAc- -3'
miRNA:   3'- -CGCAGUCGUUGacc--UGGC--AGUUGUuc -5'
26334 5' -50.7 NC_005345.2 + 39735 0.68 0.820868
Target:  5'- cCGUCGGCGagaccccGCUGccacgcGCCGUCGACGAc -3'
miRNA:   3'- cGCAGUCGU-------UGACc-----UGGCAGUUGUUc -5'
26334 5' -50.7 NC_005345.2 + 40043 0.68 0.818947
Target:  5'- -aGUCgAGCAGCUcgaccacacagcggGGACCGUCAccgucgaccGCGGGc -3'
miRNA:   3'- cgCAG-UCGUUGA--------------CCUGGCAGU---------UGUUC- -5'
26334 5' -50.7 NC_005345.2 + 41313 0.68 0.812161
Target:  5'- gGCGcCGGCGGCUGGACgcccuacaCGcCGACGu- -3'
miRNA:   3'- -CGCaGUCGUUGACCUG--------GCaGUUGUuc -5'
26334 5' -50.7 NC_005345.2 + 5298 0.68 0.802293
Target:  5'- cGCGUCGGCGAUcaGGCCGgCcGCGAGc -3'
miRNA:   3'- -CGCAGUCGUUGacCUGGCaGuUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.