miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26335 3' -63.9 NC_005345.2 + 34100 0.66 0.307618
Target:  5'- gGCG-CCCgCGAcGGCgacaUCGCCGCCgACGCg -3'
miRNA:   3'- -CGCuGGG-GCUcCCG----GGCGGUGG-UGUG- -5'
26335 3' -63.9 NC_005345.2 + 33027 0.66 0.307618
Target:  5'- cGgGACgCCGccGGCCgGCCGCUgcuCACa -3'
miRNA:   3'- -CgCUGgGGCucCCGGgCGGUGGu--GUG- -5'
26335 3' -63.9 NC_005345.2 + 15756 0.66 0.305453
Target:  5'- uGCaGACagugcugcaucguaUCCG-GGGCCgCGCCACCGCc- -3'
miRNA:   3'- -CG-CUG--------------GGGCuCCCGG-GCGGUGGUGug -5'
26335 3' -63.9 NC_005345.2 + 12145 0.66 0.305453
Target:  5'- gGCGGCaugCCGAgggagcugcgcacgGGGCUCGCCGCCcucggaugGCAg -3'
miRNA:   3'- -CGCUGg--GGCU--------------CCCGGGCGGUGG--------UGUg -5'
26335 3' -63.9 NC_005345.2 + 12945 0.66 0.300448
Target:  5'- aGCGGCcaCCCGGcGGCgaGCCACCccCACg -3'
miRNA:   3'- -CGCUG--GGGCUcCCGggCGGUGGu-GUG- -5'
26335 3' -63.9 NC_005345.2 + 46473 0.66 0.300448
Target:  5'- aGCGGCCCgcaUGuGGaGCgCGCCACgCGCGg -3'
miRNA:   3'- -CGCUGGG---GCuCC-CGgGCGGUG-GUGUg -5'
26335 3' -63.9 NC_005345.2 + 48433 0.66 0.293407
Target:  5'- gGgGAUgCCGAccGGGCCCGCUuacACCugcuCGCc -3'
miRNA:   3'- -CgCUGgGGCU--CCCGGGCGG---UGGu---GUG- -5'
26335 3' -63.9 NC_005345.2 + 30809 0.66 0.286495
Target:  5'- uCGACCUCGAcccGGGCCgaCGUCGCgGCGu -3'
miRNA:   3'- cGCUGGGGCU---CCCGG--GCGGUGgUGUg -5'
26335 3' -63.9 NC_005345.2 + 13578 0.66 0.286495
Target:  5'- aCGAUCgaCGGGugcucGCCgCGCCACCGCACc -3'
miRNA:   3'- cGCUGGg-GCUCc----CGG-GCGGUGGUGUG- -5'
26335 3' -63.9 NC_005345.2 + 30140 0.66 0.279713
Target:  5'- gGCGACgUCGA-GGCgCCGCC-CCGCuCg -3'
miRNA:   3'- -CGCUGgGGCUcCCG-GGCGGuGGUGuG- -5'
26335 3' -63.9 NC_005345.2 + 4367 0.66 0.279042
Target:  5'- uUGAUCuCCGAGGcGCCCcgcggcgGCCGCguCGCg -3'
miRNA:   3'- cGCUGG-GGCUCC-CGGG-------CGGUGguGUG- -5'
26335 3' -63.9 NC_005345.2 + 15499 0.66 0.275705
Target:  5'- cCGACCCCGcuucGGGauuccccgagccgguGCCCGUCGCaggcaGCACc -3'
miRNA:   3'- cGCUGGGGC----UCC---------------CGGGCGGUGg----UGUG- -5'
26335 3' -63.9 NC_005345.2 + 19196 0.66 0.275705
Target:  5'- uGCGGCCCgcagccaccaugcggUGAGcGCCCacaucaGCCACgGCACg -3'
miRNA:   3'- -CGCUGGG---------------GCUCcCGGG------CGGUGgUGUG- -5'
26335 3' -63.9 NC_005345.2 + 19464 0.66 0.273059
Target:  5'- aGC-ACCCCGcggguGGGCaCGCCGCCGaucuuCACu -3'
miRNA:   3'- -CGcUGGGGCu----CCCGgGCGGUGGU-----GUG- -5'
26335 3' -63.9 NC_005345.2 + 11654 0.66 0.273059
Target:  5'- cGCcACCgCGAGGcGCCCGUCgucgagcuGCCGgGCg -3'
miRNA:   3'- -CGcUGGgGCUCC-CGGGCGG--------UGGUgUG- -5'
26335 3' -63.9 NC_005345.2 + 14625 0.66 0.273059
Target:  5'- aCG-CCCgCGAGgccgcGGCCCGCCucgACCGCGu -3'
miRNA:   3'- cGCuGGG-GCUC-----CCGGGCGG---UGGUGUg -5'
26335 3' -63.9 NC_005345.2 + 47578 0.66 0.273059
Target:  5'- aCGGCCCCcacGGcGGCgaCUGCCGCCuCACg -3'
miRNA:   3'- cGCUGGGGc--UC-CCG--GGCGGUGGuGUG- -5'
26335 3' -63.9 NC_005345.2 + 40731 0.66 0.269128
Target:  5'- aGCGACCCgGgcagcccuacguacuGGGGCggaccguucggCCGCCgGCCGCGg -3'
miRNA:   3'- -CGCUGGGgC---------------UCCCG-----------GGCGG-UGGUGUg -5'
26335 3' -63.9 NC_005345.2 + 9724 0.66 0.266532
Target:  5'- cGCG-CCgCGcGGG-CCGCgACCGCGCc -3'
miRNA:   3'- -CGCuGGgGCuCCCgGGCGgUGGUGUG- -5'
26335 3' -63.9 NC_005345.2 + 44875 0.66 0.266532
Target:  5'- cCGAgCCCGAGcuGCCCGC-ACCGC-Cg -3'
miRNA:   3'- cGCUgGGGCUCc-CGGGCGgUGGUGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.