miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26335 5' -58.8 NC_005345.2 + 3380 0.66 0.439079
Target:  5'- cGGCGGcGGCGCGGGCgacgauCGUGGGgGCg- -3'
miRNA:   3'- uUCGCU-CCGCGCUCG------GUACUCaCGag -5'
26335 5' -58.8 NC_005345.2 + 33384 0.66 0.439079
Target:  5'- gGAGauGGGCGCGGGCCcgcucgcgGUGGGcgagcaGCUCg -3'
miRNA:   3'- -UUCgcUCCGCGCUCGG--------UACUCa-----CGAG- -5'
26335 5' -58.8 NC_005345.2 + 4404 0.66 0.429358
Target:  5'- -cGCGAGGUGCucgcgggugGGGCgCAUcgacGGGUGCUUg -3'
miRNA:   3'- uuCGCUCCGCG---------CUCG-GUA----CUCACGAG- -5'
26335 5' -58.8 NC_005345.2 + 8930 0.66 0.419765
Target:  5'- cGGCGGccgcccccguGG-GCGGGCUgcGGGUGCUCg -3'
miRNA:   3'- uUCGCU----------CCgCGCUCGGuaCUCACGAG- -5'
26335 5' -58.8 NC_005345.2 + 22583 0.66 0.419765
Target:  5'- cAGCaGAGGgGCGAGCCccGGGcguUGCa- -3'
miRNA:   3'- uUCG-CUCCgCGCUCGGuaCUC---ACGag -5'
26335 5' -58.8 NC_005345.2 + 45521 0.67 0.40005
Target:  5'- -uGCGGacggcacaccugcGGCGCGGGCCGUGGG-GUc- -3'
miRNA:   3'- uuCGCU-------------CCGCGCUCGGUACUCaCGag -5'
26335 5' -58.8 NC_005345.2 + 26550 0.67 0.392696
Target:  5'- uGGCGAagGuGCGCGAGCacaucgcgucguucaGUGAGggGCUCg -3'
miRNA:   3'- uUCGCU--C-CGCGCUCGg--------------UACUCa-CGAG- -5'
26335 5' -58.8 NC_005345.2 + 7993 0.67 0.391783
Target:  5'- uAAGCGAuccGUGCG-GCCAUGAGcGCgUCa -3'
miRNA:   3'- -UUCGCUc--CGCGCuCGGUACUCaCG-AG- -5'
26335 5' -58.8 NC_005345.2 + 10277 0.67 0.377365
Target:  5'- -cGCGAuccccgaggagaugcGGCGCGGGCUGUGGGaGCg- -3'
miRNA:   3'- uuCGCU---------------CCGCGCUCGGUACUCaCGag -5'
26335 5' -58.8 NC_005345.2 + 12435 0.67 0.356417
Target:  5'- -uGCGAGGCGuCGGGCCcc--GUGCa- -3'
miRNA:   3'- uuCGCUCCGC-GCUCGGuacuCACGag -5'
26335 5' -58.8 NC_005345.2 + 9599 0.68 0.347933
Target:  5'- -uGCGAGGUGCaGAGC---GAGUGcCUCg -3'
miRNA:   3'- uuCGCUCCGCG-CUCGguaCUCAC-GAG- -5'
26335 5' -58.8 NC_005345.2 + 27343 0.68 0.338768
Target:  5'- uGGCGGGGCGCGGuacuuccGCCGUcGGcuguccgGCUCg -3'
miRNA:   3'- uUCGCUCCGCGCU-------CGGUAcUCa------CGAG- -5'
26335 5' -58.8 NC_005345.2 + 11331 0.68 0.331401
Target:  5'- gAGGCGAGcGcCGCGAGCaGUGAGcgGCa- -3'
miRNA:   3'- -UUCGCUC-C-GCGCUCGgUACUCa-CGag -5'
26335 5' -58.8 NC_005345.2 + 44987 0.68 0.331401
Target:  5'- gGGGCGGGGUGCucacGGCUcgGGcUGCUCg -3'
miRNA:   3'- -UUCGCUCCGCGc---UCGGuaCUcACGAG- -5'
26335 5' -58.8 NC_005345.2 + 46543 0.68 0.331401
Target:  5'- cGGCGAGGcCGCGGGCguugucgaUGUGGGUGUc- -3'
miRNA:   3'- uUCGCUCC-GCGCUCG--------GUACUCACGag -5'
26335 5' -58.8 NC_005345.2 + 22037 0.68 0.323355
Target:  5'- cGGGCaucGGCGCGGGCCGUGAucgGCa- -3'
miRNA:   3'- -UUCGcu-CCGCGCUCGGUACUca-CGag -5'
26335 5' -58.8 NC_005345.2 + 12848 0.69 0.292634
Target:  5'- cGGCGAGGaccgGUGAcGUCGUGGGggugGCUCg -3'
miRNA:   3'- uUCGCUCCg---CGCU-CGGUACUCa---CGAG- -5'
26335 5' -58.8 NC_005345.2 + 42683 0.69 0.285319
Target:  5'- gGGGCGGGGCG-GGGCgGUGGGggacgugGCUa -3'
miRNA:   3'- -UUCGCUCCGCgCUCGgUACUCa------CGAg -5'
26335 5' -58.8 NC_005345.2 + 17463 0.69 0.264242
Target:  5'- -uGCGGGGUGCGAGUgCGUcucGGGUGCg- -3'
miRNA:   3'- uuCGCUCCGCGCUCG-GUA---CUCACGag -5'
26335 5' -58.8 NC_005345.2 + 23118 0.69 0.264242
Target:  5'- cGAGCGAGGCgGCGAGUCGggucUGucccGUGCa- -3'
miRNA:   3'- -UUCGCUCCG-CGCUCGGU----ACu---CACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.