miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26336 3' -56.2 NC_005345.2 + 6925 0.66 0.671778
Target:  5'- cGACuucCCGUCcgUCGCCGcGaGGACCa -3'
miRNA:   3'- aCUGuu-GGCAG--AGCGGCaCgUCUGGc -5'
26336 3' -56.2 NC_005345.2 + 24115 0.66 0.671778
Target:  5'- --uCGugCGUaUCGCCGcGguGACCGa -3'
miRNA:   3'- acuGUugGCAgAGCGGCaCguCUGGC- -5'
26336 3' -56.2 NC_005345.2 + 46008 0.66 0.671778
Target:  5'- cGAC-GCCGUCggcacgGCUGUGCAGuggcGCCu -3'
miRNA:   3'- aCUGuUGGCAGag----CGGCACGUC----UGGc -5'
26336 3' -56.2 NC_005345.2 + 34721 0.66 0.671778
Target:  5'- cGGCGACCGcgaCGCCGagcgGCAGcaGCCa -3'
miRNA:   3'- aCUGUUGGCagaGCGGCa---CGUC--UGGc -5'
26336 3' -56.2 NC_005345.2 + 9163 0.66 0.671778
Target:  5'- cGACGugCGggcggUCGCCGgcgacgGCGGcCCGg -3'
miRNA:   3'- aCUGUugGCag---AGCGGCa-----CGUCuGGC- -5'
26336 3' -56.2 NC_005345.2 + 37025 0.66 0.660855
Target:  5'- -aGCGGCCGUCU-GCCGcUGUccGGCCGc -3'
miRNA:   3'- acUGUUGGCAGAgCGGC-ACGu-CUGGC- -5'
26336 3' -56.2 NC_005345.2 + 34642 0.66 0.660855
Target:  5'- gUGGCugcuGCCG-CUCGgCGUcGCGGucGCCGg -3'
miRNA:   3'- -ACUGu---UGGCaGAGCgGCA-CGUC--UGGC- -5'
26336 3' -56.2 NC_005345.2 + 8462 0.66 0.660855
Target:  5'- cGGCAGCgG-CUCGUCGggccgGUcGGCCGg -3'
miRNA:   3'- aCUGUUGgCaGAGCGGCa----CGuCUGGC- -5'
26336 3' -56.2 NC_005345.2 + 29064 0.66 0.649905
Target:  5'- cGGCGGCgGgCUCGCCG---AGACCGc -3'
miRNA:   3'- aCUGUUGgCaGAGCGGCacgUCUGGC- -5'
26336 3' -56.2 NC_005345.2 + 3784 0.66 0.649905
Target:  5'- cGAuCAGCUGcacCUCGCCGccgGCGG-CCGa -3'
miRNA:   3'- aCU-GUUGGCa--GAGCGGCa--CGUCuGGC- -5'
26336 3' -56.2 NC_005345.2 + 31625 0.66 0.649905
Target:  5'- aUGGCGACaCGgucCUCGcCCGgccgGC-GACCGg -3'
miRNA:   3'- -ACUGUUG-GCa--GAGC-GGCa---CGuCUGGC- -5'
26336 3' -56.2 NC_005345.2 + 21644 0.66 0.649905
Target:  5'- gGGCcgucgGGCCGUCUCGCgccaaCGUGCGGcguuCCc -3'
miRNA:   3'- aCUG-----UUGGCAGAGCG-----GCACGUCu---GGc -5'
26336 3' -56.2 NC_005345.2 + 10072 0.66 0.649905
Target:  5'- cGAC-GCCGUCgaggCGCuCGUcaucCGGGCCGa -3'
miRNA:   3'- aCUGuUGGCAGa---GCG-GCAc---GUCUGGC- -5'
26336 3' -56.2 NC_005345.2 + 43370 0.66 0.638938
Target:  5'- cGGuCGACgCGUa-CGCCGaccUGCGGACCGc -3'
miRNA:   3'- aCU-GUUG-GCAgaGCGGC---ACGUCUGGC- -5'
26336 3' -56.2 NC_005345.2 + 23600 0.66 0.638938
Target:  5'- cGGCGuUCGgcgCgaCGCCG-GCGGACCGg -3'
miRNA:   3'- aCUGUuGGCa--Ga-GCGGCaCGUCUGGC- -5'
26336 3' -56.2 NC_005345.2 + 39806 0.66 0.638938
Target:  5'- gUGGCAGCgggGUCUCGCCGa-CGGACa- -3'
miRNA:   3'- -ACUGUUGg--CAGAGCGGCacGUCUGgc -5'
26336 3' -56.2 NC_005345.2 + 20603 0.66 0.638938
Target:  5'- aUGcCGGgCGUgUCGCC--GCAGGCCGa -3'
miRNA:   3'- -ACuGUUgGCAgAGCGGcaCGUCUGGC- -5'
26336 3' -56.2 NC_005345.2 + 7292 0.66 0.638938
Target:  5'- cGACGacACCGg-UCGCCGUGUcGACa- -3'
miRNA:   3'- aCUGU--UGGCagAGCGGCACGuCUGgc -5'
26336 3' -56.2 NC_005345.2 + 31747 0.66 0.627966
Target:  5'- gGGCugcGCCuGUCUCGgCGUcgggaaggaacuGCGGGCCGc -3'
miRNA:   3'- aCUGu--UGG-CAGAGCgGCA------------CGUCUGGC- -5'
26336 3' -56.2 NC_005345.2 + 32497 0.66 0.616997
Target:  5'- aGAgcguGCCGUCggcCGCCGgGUAGAUCGu -3'
miRNA:   3'- aCUgu--UGGCAGa--GCGGCaCGUCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.