miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26336 5' -63.9 NC_005345.2 + 6550 0.66 0.284447
Target:  5'- cUCGGGCUCgCCGCCguacagcucggcggCCCGC--UCGa -3'
miRNA:   3'- cAGCCCGAGgGGCGG--------------GGGUGcuAGCa -5'
26336 5' -63.9 NC_005345.2 + 19358 0.66 0.279713
Target:  5'- cUCGGGaUCCCCGUCgaaCCCAaagugaaGAUCGg -3'
miRNA:   3'- cAGCCCgAGGGGCGG---GGGUg------CUAGCa -5'
26336 5' -63.9 NC_005345.2 + 35625 0.66 0.279713
Target:  5'- -cCGGGCgagCCCgaaggcgGCCCCCAUGAgcuUCGc -3'
miRNA:   3'- caGCCCGa--GGGg------CGGGGGUGCU---AGCa -5'
26336 5' -63.9 NC_005345.2 + 5538 0.66 0.279713
Target:  5'- uUCGGGUcggUCacucggcaCCGCCCCUACGGcCGa -3'
miRNA:   3'- cAGCCCG---AGg-------GGCGGGGGUGCUaGCa -5'
26336 5' -63.9 NC_005345.2 + 30340 0.66 0.272401
Target:  5'- cUCGGGCUcgacgagCCCgGCCUgcucggcggCCGCGAUCa- -3'
miRNA:   3'- cAGCCCGA-------GGGgCGGG---------GGUGCUAGca -5'
26336 5' -63.9 NC_005345.2 + 9736 0.67 0.253859
Target:  5'- -gCGGcGCUCgcgguacgucagCCCGCCCCaCACGccGUCGg -3'
miRNA:   3'- caGCC-CGAG------------GGGCGGGG-GUGC--UAGCa -5'
26336 5' -63.9 NC_005345.2 + 41200 0.67 0.253859
Target:  5'- -aCGGGaUCCCCGCCCgC-CGGcUCGa -3'
miRNA:   3'- caGCCCgAGGGGCGGGgGuGCU-AGCa -5'
26336 5' -63.9 NC_005345.2 + 13686 0.67 0.24771
Target:  5'- cGUCGGGCagCUCGCCCUCgaauGCGG-CGa -3'
miRNA:   3'- -CAGCCCGagGGGCGGGGG----UGCUaGCa -5'
26336 5' -63.9 NC_005345.2 + 44696 0.67 0.241089
Target:  5'- -cCGGGC-CCCCGCCggagccuCCaCACGAccUCGa -3'
miRNA:   3'- caGCCCGaGGGGCGG-------GG-GUGCU--AGCa -5'
26336 5' -63.9 NC_005345.2 + 48661 0.67 0.235782
Target:  5'- -gCGuGGgUCCUCGCCCgCCGCGAgcucaUCGg -3'
miRNA:   3'- caGC-CCgAGGGGCGGG-GGUGCU-----AGCa -5'
26336 5' -63.9 NC_005345.2 + 33317 0.67 0.235782
Target:  5'- -gCGGGC-CCgCGCCCaucuccaCGCGGUCGc -3'
miRNA:   3'- caGCCCGaGGgGCGGGg------GUGCUAGCa -5'
26336 5' -63.9 NC_005345.2 + 16956 0.67 0.230001
Target:  5'- -aCGGGCgccUUCCGCCgCCACGcUCGg -3'
miRNA:   3'- caGCCCGa--GGGGCGGgGGUGCuAGCa -5'
26336 5' -63.9 NC_005345.2 + 28736 0.68 0.218797
Target:  5'- cGUCGGGUUccuguacucggCCCUGCaggcgCCCGCGGUCa- -3'
miRNA:   3'- -CAGCCCGA-----------GGGGCGg----GGGUGCUAGca -5'
26336 5' -63.9 NC_005345.2 + 38993 0.68 0.213372
Target:  5'- -gCGGGUgaagUUCCaCGCCCCgGCGGUCa- -3'
miRNA:   3'- caGCCCG----AGGG-GCGGGGgUGCUAGca -5'
26336 5' -63.9 NC_005345.2 + 34524 0.68 0.202869
Target:  5'- --aGGuGCUCCCgGUCCUCGCGAaggUCGg -3'
miRNA:   3'- cagCC-CGAGGGgCGGGGGUGCU---AGCa -5'
26336 5' -63.9 NC_005345.2 + 10041 0.68 0.202869
Target:  5'- -gCGGGCUgCUCGCCgaggaCGCGAUCGg -3'
miRNA:   3'- caGCCCGAgGGGCGGgg---GUGCUAGCa -5'
26336 5' -63.9 NC_005345.2 + 19449 0.69 0.16958
Target:  5'- --gGGGCacgUCCCCGUCuCCCGCGA-CGg -3'
miRNA:   3'- cagCCCG---AGGGGCGG-GGGUGCUaGCa -5'
26336 5' -63.9 NC_005345.2 + 38131 0.69 0.165244
Target:  5'- -gCGGcGCaaUCCCCGCCaCCGCGAUCc- -3'
miRNA:   3'- caGCC-CG--AGGGGCGGgGGUGCUAGca -5'
26336 5' -63.9 NC_005345.2 + 20504 0.74 0.082637
Target:  5'- gGUCgGGGCUUUCCGCugCCCCGgGAUCGg -3'
miRNA:   3'- -CAG-CCCGAGGGGCG--GGGGUgCUAGCa -5'
26336 5' -63.9 NC_005345.2 + 3289 1.06 0.00024
Target:  5'- cGUCGGGCUCCCCGCCCCCACGAUCGUc -3'
miRNA:   3'- -CAGCCCGAGGGGCGGGGGUGCUAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.