miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26337 3' -63.6 NC_005345.2 + 29504 0.66 0.349298
Target:  5'- gCGaCCCaCGAUUcgagaucgcugaUCGGCguCGCUGUCGCg -3'
miRNA:   3'- gGC-GGG-GCUGG------------AGCCG--GCGACAGCGg -5'
26337 3' -63.6 NC_005345.2 + 22219 0.66 0.349298
Target:  5'- uCUGCCUCGACCUCGaCCaugcGCUcGaCGUCg -3'
miRNA:   3'- -GGCGGGGCUGGAGCcGG----CGA-CaGCGG- -5'
26337 3' -63.6 NC_005345.2 + 46583 0.66 0.349298
Target:  5'- uCgGCCCCGAgcacgucgaCCg-GGCacuCGCcGUCGCCa -3'
miRNA:   3'- -GgCGGGGCU---------GGagCCG---GCGaCAGCGG- -5'
26337 3' -63.6 NC_005345.2 + 29992 0.66 0.349298
Target:  5'- gCCGUacgggCCCGGcgacgacguCC-CGGCCGagGUCGCCg -3'
miRNA:   3'- -GGCG-----GGGCU---------GGaGCCGGCgaCAGCGG- -5'
26337 3' -63.6 NC_005345.2 + 24957 0.66 0.349298
Target:  5'- uCgGCCCCGACgggCGGCCGgUcgaGUgGCa -3'
miRNA:   3'- -GgCGGGGCUGga-GCCGGCgA---CAgCGg -5'
26337 3' -63.6 NC_005345.2 + 922 0.66 0.349298
Target:  5'- gCGCCUCG-CCaauguccaggUCGGCCGCcggGUugaacgggauaCGCCg -3'
miRNA:   3'- gGCGGGGCuGG----------AGCCGGCGa--CA-----------GCGG- -5'
26337 3' -63.6 NC_005345.2 + 45100 0.66 0.349298
Target:  5'- aCCGUgUCGGCgCUCGucggcGCCGUcGUCGCa -3'
miRNA:   3'- -GGCGgGGCUG-GAGC-----CGGCGaCAGCGg -5'
26337 3' -63.6 NC_005345.2 + 23660 0.66 0.349298
Target:  5'- aCgGCgCCGACCagGGUCGCggccgGUCgggcggGCCg -3'
miRNA:   3'- -GgCGgGGCUGGagCCGGCGa----CAG------CGG- -5'
26337 3' -63.6 NC_005345.2 + 34542 0.66 0.348513
Target:  5'- aUCGCCugCCGcuugaacACCUCGaaGUCGUUcGUCGCCg -3'
miRNA:   3'- -GGCGG--GGC-------UGGAGC--CGGCGA-CAGCGG- -5'
26337 3' -63.6 NC_005345.2 + 32907 0.66 0.341508
Target:  5'- aUCGCCUCGAaCUCGGCCcacuGCUucccgagUGCCu -3'
miRNA:   3'- -GGCGGGGCUgGAGCCGG----CGAca-----GCGG- -5'
26337 3' -63.6 NC_005345.2 + 31364 0.66 0.341508
Target:  5'- gCGCCCgGcgggaauCCUCGGgguCCGCcguggcguaGUCGCCg -3'
miRNA:   3'- gGCGGGgCu------GGAGCC---GGCGa--------CAGCGG- -5'
26337 3' -63.6 NC_005345.2 + 5675 0.66 0.341508
Target:  5'- aCCGagCCGACCgcgcUGcGCCGCgaacUCGCCg -3'
miRNA:   3'- -GGCggGGCUGGa---GC-CGGCGac--AGCGG- -5'
26337 3' -63.6 NC_005345.2 + 2760 0.66 0.341508
Target:  5'- gCCGCCUucggaCGGCg-UGGCUGCUcGcCGCCg -3'
miRNA:   3'- -GGCGGG-----GCUGgaGCCGGCGA-CaGCGG- -5'
26337 3' -63.6 NC_005345.2 + 32601 0.66 0.341508
Target:  5'- gCgGCCCgGACCcgcgcagaUCgGGCCGCc--CGCCg -3'
miRNA:   3'- -GgCGGGgCUGG--------AG-CCGGCGacaGCGG- -5'
26337 3' -63.6 NC_005345.2 + 27969 0.66 0.341508
Target:  5'- gUCGUCCUGGuCgUCGuCCGUgucGUCGCCg -3'
miRNA:   3'- -GGCGGGGCU-GgAGCcGGCGa--CAGCGG- -5'
26337 3' -63.6 NC_005345.2 + 34604 0.66 0.340735
Target:  5'- gCGCCCCGACCUucgcgaggacCGGgagcaccUCGCgGUCGaUCa -3'
miRNA:   3'- gGCGGGGCUGGA----------GCC-------GGCGaCAGC-GG- -5'
26337 3' -63.6 NC_005345.2 + 7152 0.66 0.333843
Target:  5'- -gGCCCgGGacgggUCGGacCCGCUGUCGCa -3'
miRNA:   3'- ggCGGGgCUgg---AGCC--GGCGACAGCGg -5'
26337 3' -63.6 NC_005345.2 + 18951 0.66 0.333843
Target:  5'- gUCGCCCgGcaggguccgaaGCgCUC-GCCGCauggGUCGCCg -3'
miRNA:   3'- -GGCGGGgC-----------UG-GAGcCGGCGa---CAGCGG- -5'
26337 3' -63.6 NC_005345.2 + 5004 0.66 0.333843
Target:  5'- aCCGCcaCCCGGCCggagcgcaCGuGCgGCUGcCGCa -3'
miRNA:   3'- -GGCG--GGGCUGGa-------GC-CGgCGACaGCGg -5'
26337 3' -63.6 NC_005345.2 + 24164 0.66 0.333084
Target:  5'- cCCGCUCCucgaaauGGCgCggggCGGuUCGCUGUCGaCCg -3'
miRNA:   3'- -GGCGGGG-------CUG-Ga---GCC-GGCGACAGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.