miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26337 5' -54.5 NC_005345.2 + 8966 0.66 0.74488
Target:  5'- aGCGGggacgggGCGccGGCGGGCaugaguccGGAGAGcGUCa -3'
miRNA:   3'- -CGUCa------CGU--UCGCCCG--------CUUCUCaCAGc -5'
26337 5' -54.5 NC_005345.2 + 40051 0.66 0.734242
Target:  5'- uGUAGgacucgGCGAGCGuGGCGAGGAaucgcgcUGUUGc -3'
miRNA:   3'- -CGUCa-----CGUUCGC-CCGCUUCUc------ACAGC- -5'
26337 5' -54.5 NC_005345.2 + 4136 0.66 0.723499
Target:  5'- aGCGGcUGCucGCGGcGCucgucGAGcGGGUGUCGa -3'
miRNA:   3'- -CGUC-ACGuuCGCC-CG-----CUU-CUCACAGC- -5'
26337 5' -54.5 NC_005345.2 + 13476 0.66 0.720258
Target:  5'- aCGGUGCGgcgcaggacgaaccGGCgGGGCGggGcGGUGgguUCGg -3'
miRNA:   3'- cGUCACGU--------------UCG-CCCGCuuC-UCAC---AGC- -5'
26337 5' -54.5 NC_005345.2 + 15864 0.66 0.712662
Target:  5'- aGCGGcGCGAGagGGGUGggGgcGGUGgcgCGg -3'
miRNA:   3'- -CGUCaCGUUCg-CCCGCuuC--UCACa--GC- -5'
26337 5' -54.5 NC_005345.2 + 48354 0.66 0.712662
Target:  5'- aGCAgGUGUAAGCGGGCccg----GUCGg -3'
miRNA:   3'- -CGU-CACGUUCGCCCGcuucucaCAGC- -5'
26337 5' -54.5 NC_005345.2 + 7359 0.67 0.679709
Target:  5'- cGCGGUgGCGcAGcCGGGCGggG-GUGg-- -3'
miRNA:   3'- -CGUCA-CGU-UC-GCCCGCuuCuCACagc -5'
26337 5' -54.5 NC_005345.2 + 14899 0.67 0.668616
Target:  5'- gGCGGaGC-AGCGGGCGAAGcGGgccgCGg -3'
miRNA:   3'- -CGUCaCGuUCGCCCGCUUC-UCaca-GC- -5'
26337 5' -54.5 NC_005345.2 + 3226 0.67 0.667505
Target:  5'- uGguGUGguGGCGGGCccucGGGGUcgcuccgGUCGg -3'
miRNA:   3'- -CguCACguUCGCCCGcu--UCUCA-------CAGC- -5'
26337 5' -54.5 NC_005345.2 + 17483 0.67 0.657488
Target:  5'- -gGGUGCAccucggguGCGGGUGcGGGGUG-CGa -3'
miRNA:   3'- cgUCACGUu-------CGCCCGCuUCUCACaGC- -5'
26337 5' -54.5 NC_005345.2 + 3376 0.67 0.646335
Target:  5'- gGCGGcGCGGGCgacgaucguggGGGCGggGAGcccgacgccGUCGa -3'
miRNA:   3'- -CGUCaCGUUCG-----------CCCGCuuCUCa--------CAGC- -5'
26337 5' -54.5 NC_005345.2 + 27842 0.67 0.63517
Target:  5'- uGCAGgccgGUgcGCGGGUGAcggggcAGAGUG-CGu -3'
miRNA:   3'- -CGUCa---CGuuCGCCCGCU------UCUCACaGC- -5'
26337 5' -54.5 NC_005345.2 + 26356 0.67 0.63517
Target:  5'- cGCGGUGUggGCGu-CGGAGGGUGa-- -3'
miRNA:   3'- -CGUCACGuuCGCccGCUUCUCACagc -5'
26337 5' -54.5 NC_005345.2 + 43660 0.68 0.624001
Target:  5'- cGguGUGCGGGUGGGaggcgggucaguUGgcGAGgcgGUCGg -3'
miRNA:   3'- -CguCACGUUCGCCC------------GCuuCUCa--CAGC- -5'
26337 5' -54.5 NC_005345.2 + 43956 0.68 0.624001
Target:  5'- aCGGgcgGCAgGGCGGGCucGGGG-GUCGg -3'
miRNA:   3'- cGUCa--CGU-UCGCCCGcuUCUCaCAGC- -5'
26337 5' -54.5 NC_005345.2 + 2977 0.68 0.61284
Target:  5'- aGCGGcGCGaauccGGUgGGGCGGAGGaUGUCGg -3'
miRNA:   3'- -CGUCaCGU-----UCG-CCCGCUUCUcACAGC- -5'
26337 5' -54.5 NC_005345.2 + 21758 0.68 0.61284
Target:  5'- gGCcccuGUGCugcucgcuGGCGGGCGAGccGGG-GUCGg -3'
miRNA:   3'- -CGu---CACGu-------UCGCCCGCUU--CUCaCAGC- -5'
26337 5' -54.5 NC_005345.2 + 27373 0.68 0.61284
Target:  5'- cGCGGcaUGCGuGCGGGCGAGcugcAG-GUCGg -3'
miRNA:   3'- -CGUC--ACGUuCGCCCGCUUc---UCaCAGC- -5'
26337 5' -54.5 NC_005345.2 + 319 0.68 0.606151
Target:  5'- -aGGUGCGGGC-GGCGAuggcucccgagaccgAGGGUGuUCGa -3'
miRNA:   3'- cgUCACGUUCGcCCGCU---------------UCUCAC-AGC- -5'
26337 5' -54.5 NC_005345.2 + 47900 0.68 0.579497
Target:  5'- aGCAGccgcUGCGGGUccuccaGGGCGAGGcGcUGUCGa -3'
miRNA:   3'- -CGUC----ACGUUCG------CCCGCUUCuC-ACAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.