miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26338 3' -60 NC_005345.2 + 28201 0.66 0.496738
Target:  5'- cGCCggCCCGGGUgCGU--UCCUCGGCa -3'
miRNA:   3'- cUGG--GGGCCCAaGCAguGGGAGCUGc -5'
26338 3' -60 NC_005345.2 + 21338 0.66 0.496738
Target:  5'- -uCCCggCCGGGUUCGacgUACagCUCGGCGa -3'
miRNA:   3'- cuGGG--GGCCCAAGCa--GUGg-GAGCUGC- -5'
26338 3' -60 NC_005345.2 + 4869 0.66 0.496738
Target:  5'- aGCUgCCGGGgggcgaUCGUCACC-UCGaACGg -3'
miRNA:   3'- cUGGgGGCCCa-----AGCAGUGGgAGC-UGC- -5'
26338 3' -60 NC_005345.2 + 12880 0.66 0.476984
Target:  5'- cGCCgCCGGGUggccgcucgccUCGaUCGCCg-CGACGg -3'
miRNA:   3'- cUGGgGGCCCA-----------AGC-AGUGGgaGCUGC- -5'
26338 3' -60 NC_005345.2 + 30343 0.66 0.476984
Target:  5'- aGGCCCgCGccgcCGUCACCCUgccCGACGg -3'
miRNA:   3'- -CUGGGgGCccaaGCAGUGGGA---GCUGC- -5'
26338 3' -60 NC_005345.2 + 19617 0.66 0.467253
Target:  5'- cGCCCCCGaGUaccUCGaCGCCgaCGACGa -3'
miRNA:   3'- cUGGGGGCcCA---AGCaGUGGgaGCUGC- -5'
26338 3' -60 NC_005345.2 + 41800 0.66 0.467253
Target:  5'- cGACgCCCCGGacgUCGagACCCUUGcgcACGg -3'
miRNA:   3'- -CUG-GGGGCCca-AGCagUGGGAGC---UGC- -5'
26338 3' -60 NC_005345.2 + 24632 0.66 0.467253
Target:  5'- cGAUCCgccgugcgggCCGGGUUgGUCGCCgaUCGAgCGg -3'
miRNA:   3'- -CUGGG----------GGCCCAAgCAGUGGg-AGCU-GC- -5'
26338 3' -60 NC_005345.2 + 17217 0.66 0.467253
Target:  5'- --aCCUCGGGUUCGa---CCUCGACc -3'
miRNA:   3'- cugGGGGCCCAAGCagugGGAGCUGc -5'
26338 3' -60 NC_005345.2 + 20069 0.66 0.448106
Target:  5'- cGGCagCCCGcc--UGUCGCCCUCGGCGa -3'
miRNA:   3'- -CUGg-GGGCccaaGCAGUGGGAGCUGC- -5'
26338 3' -60 NC_005345.2 + 40055 0.67 0.438697
Target:  5'- cGACCaCacagCGGGgacCGUCACCgUCGACc -3'
miRNA:   3'- -CUGG-Gg---GCCCaa-GCAGUGGgAGCUGc -5'
26338 3' -60 NC_005345.2 + 4034 0.67 0.429402
Target:  5'- uGACgaaCCCGGGg--GUCG-CCUCGACGu -3'
miRNA:   3'- -CUGg--GGGCCCaagCAGUgGGAGCUGC- -5'
26338 3' -60 NC_005345.2 + 30572 0.67 0.429402
Target:  5'- -cCCgCCCGGGUUCGcCAUgaCC-CGGCGc -3'
miRNA:   3'- cuGG-GGGCCCAAGCaGUG--GGaGCUGC- -5'
26338 3' -60 NC_005345.2 + 7599 0.67 0.429402
Target:  5'- cACCCUCGGGgaucUCGaUC-CCCgggUCGGCGa -3'
miRNA:   3'- cUGGGGGCCCa---AGC-AGuGGG---AGCUGC- -5'
26338 3' -60 NC_005345.2 + 8820 0.67 0.420224
Target:  5'- aGACgCCggCCGGGcUCGUCugCCgCGGCu -3'
miRNA:   3'- -CUG-GG--GGCCCaAGCAGugGGaGCUGc -5'
26338 3' -60 NC_005345.2 + 19800 0.67 0.411166
Target:  5'- cGCCUCgCGGGcguugcgggCGUCGUCCUCGGCGu -3'
miRNA:   3'- cUGGGG-GCCCaa-------GCAGUGGGAGCUGC- -5'
26338 3' -60 NC_005345.2 + 22202 0.67 0.411166
Target:  5'- cGACggggaCGGGaUCGUCugCCUCGACc -3'
miRNA:   3'- -CUGggg--GCCCaAGCAGugGGAGCUGc -5'
26338 3' -60 NC_005345.2 + 28137 0.67 0.40223
Target:  5'- cGCaCCCGGGccggcgaacgCGUCGCCCggUCGGCGu -3'
miRNA:   3'- cUGgGGGCCCaa--------GCAGUGGG--AGCUGC- -5'
26338 3' -60 NC_005345.2 + 26953 0.67 0.393417
Target:  5'- cGACCggcugaUCGGGUUCGUCcucgcgGCgUUCGACGg -3'
miRNA:   3'- -CUGGg-----GGCCCAAGCAG------UGgGAGCUGC- -5'
26338 3' -60 NC_005345.2 + 35686 0.68 0.376174
Target:  5'- -gUCgCCGGGUUCGUCGgUCUgGGCa -3'
miRNA:   3'- cuGGgGGCCCAAGCAGUgGGAgCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.