miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26338 5' -50.2 NC_005345.2 + 48058 0.66 0.931334
Target:  5'- -cCG-CGAGGGgAGCGUgCGCGGCGc -3'
miRNA:   3'- gaGCaGCUCUCgUUGUAaGUGCUGCa -5'
26338 5' -50.2 NC_005345.2 + 2033 0.66 0.931334
Target:  5'- cCUCGUCGAGcgGGCccggcgcggcccGGCGggcCGCGGCGa -3'
miRNA:   3'- -GAGCAGCUC--UCG------------UUGUaa-GUGCUGCa -5'
26338 5' -50.2 NC_005345.2 + 38444 0.66 0.931334
Target:  5'- gUCGUCGugcuggguuGAGCuGCGUUUcuACGACGc -3'
miRNA:   3'- gAGCAGCu--------CUCGuUGUAAG--UGCUGCa -5'
26338 5' -50.2 NC_005345.2 + 31822 0.66 0.931334
Target:  5'- -aCGUCGAGgcgaGGCAGCuggUCAagGACGg -3'
miRNA:   3'- gaGCAGCUC----UCGUUGua-AGUg-CUGCa -5'
26338 5' -50.2 NC_005345.2 + 30804 0.66 0.931334
Target:  5'- aCUgGUCGAccucgacccGGGcCGACGU-CGCGGCGUg -3'
miRNA:   3'- -GAgCAGCU---------CUC-GUUGUAaGUGCUGCA- -5'
26338 5' -50.2 NC_005345.2 + 2215 0.66 0.919307
Target:  5'- gCUCGgcaagCGAG-GCAGCAgcCGCGGCc- -3'
miRNA:   3'- -GAGCa----GCUCuCGUUGUaaGUGCUGca -5'
26338 5' -50.2 NC_005345.2 + 39273 0.66 0.919307
Target:  5'- -gUGUCGAGcAGCAGC--UCGCGcGCGg -3'
miRNA:   3'- gaGCAGCUC-UCGUUGuaAGUGC-UGCa -5'
26338 5' -50.2 NC_005345.2 + 4044 0.66 0.912847
Target:  5'- -aCGUCGAGGGUGACGaacccgggggUCGCcucGACGUa -3'
miRNA:   3'- gaGCAGCUCUCGUUGUa---------AGUG---CUGCA- -5'
26338 5' -50.2 NC_005345.2 + 45814 0.66 0.912847
Target:  5'- uUCGggcugaGAGAgGCGGCGggCGCGGCGg -3'
miRNA:   3'- gAGCag----CUCU-CGUUGUaaGUGCUGCa -5'
26338 5' -50.2 NC_005345.2 + 12985 0.66 0.912847
Target:  5'- -aCGggCGAGggaguaGGCGGCcgUCGCGGCGa -3'
miRNA:   3'- gaGCa-GCUC------UCGUUGuaAGUGCUGCa -5'
26338 5' -50.2 NC_005345.2 + 30746 0.66 0.912847
Target:  5'- gUCGUCGAG-GUcgaGACGccgggCACGACGa -3'
miRNA:   3'- gAGCAGCUCuCG---UUGUaa---GUGCUGCa -5'
26338 5' -50.2 NC_005345.2 + 41811 0.66 0.912185
Target:  5'- -aCGUCGAGAcccuugcGCAcgGCAUUguCGACGc -3'
miRNA:   3'- gaGCAGCUCU-------CGU--UGUAAguGCUGCa -5'
26338 5' -50.2 NC_005345.2 + 30277 0.67 0.887166
Target:  5'- gCUCGUCGAgcccGAGCAGCcgaaggaguagcccgGUg-GCGGCGUa -3'
miRNA:   3'- -GAGCAGCU----CUCGUUG---------------UAagUGCUGCA- -5'
26338 5' -50.2 NC_005345.2 + 26816 0.67 0.884084
Target:  5'- aCUCGUCGAGuuccuCGGCGaUCACGuCGa -3'
miRNA:   3'- -GAGCAGCUCuc---GUUGUaAGUGCuGCa -5'
26338 5' -50.2 NC_005345.2 + 10087 0.67 0.876184
Target:  5'- gCUCGUCauccgggccGAGCGGCAcaugCGCGACGa -3'
miRNA:   3'- -GAGCAGcu-------CUCGUUGUaa--GUGCUGCa -5'
26338 5' -50.2 NC_005345.2 + 11636 0.67 0.876184
Target:  5'- gUCGUCGAGcugccgGGCGAUGaacUUCGCGGuCGUg -3'
miRNA:   3'- gAGCAGCUC------UCGUUGU---AAGUGCU-GCA- -5'
26338 5' -50.2 NC_005345.2 + 15999 0.67 0.876184
Target:  5'- -gUGUCGcAG-GCggUGUUCACGGCGa -3'
miRNA:   3'- gaGCAGC-UCuCGuuGUAAGUGCUGCa -5'
26338 5' -50.2 NC_005345.2 + 28347 0.68 0.868012
Target:  5'- gCUUGUCGAcGAGCuucGCGaUCGCGuCGUc -3'
miRNA:   3'- -GAGCAGCU-CUCGu--UGUaAGUGCuGCA- -5'
26338 5' -50.2 NC_005345.2 + 13974 0.68 0.862981
Target:  5'- gUCGUCGAuGGGCGGCAgUUCGgugaugguccggagcCGGCGg -3'
miRNA:   3'- gAGCAGCU-CUCGUUGU-AAGU---------------GCUGCa -5'
26338 5' -50.2 NC_005345.2 + 3402 0.68 0.859576
Target:  5'- gUCGUCGcGAccGUGACGUgCACGGCGg -3'
miRNA:   3'- gAGCAGCuCU--CGUUGUAaGUGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.