miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26339 3' -61.9 NC_005345.2 + 6609 0.66 0.327745
Target:  5'- aGCUGUGGacCGGCgGCGguUGCGC-CCGg -3'
miRNA:   3'- -CGACGCC--GUCGgCGUgcACGCGaGGC- -5'
26339 3' -61.9 NC_005345.2 + 8461 0.67 0.317812
Target:  5'- gGCaGCGGCucgucgggccggucGGCCgGCGCGggcgugucGCGUUCCGu -3'
miRNA:   3'- -CGaCGCCG--------------UCGG-CGUGCa-------CGCGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 10794 0.67 0.312558
Target:  5'- cGCUGCGGCAGgCGgaccggcucgaUugGUGC-CUgCGg -3'
miRNA:   3'- -CGACGCCGUCgGC-----------GugCACGcGAgGC- -5'
26339 3' -61.9 NC_005345.2 + 13725 0.67 0.312558
Target:  5'- --gGCGGCGcGCUGCuCGUcgGCGCUCaCGc -3'
miRNA:   3'- cgaCGCCGU-CGGCGuGCA--CGCGAG-GC- -5'
26339 3' -61.9 NC_005345.2 + 24088 0.67 0.312558
Target:  5'- gGCcGUGGCAcucggugcguacGCCGCuCGUGCGUaucgCCGc -3'
miRNA:   3'- -CGaCGCCGU------------CGGCGuGCACGCGa---GGC- -5'
26339 3' -61.9 NC_005345.2 + 31314 0.67 0.310326
Target:  5'- cGCUGCugcgcggucuggagGGCGGCCGgACGUGaccauGCccCCGa -3'
miRNA:   3'- -CGACG--------------CCGUCGGCgUGCACg----CGa-GGC- -5'
26339 3' -61.9 NC_005345.2 + 14991 0.67 0.310326
Target:  5'- cGCUGCaGCcGCCGCGCcgcgGCccgcuucgcccgcuGCUCCGc -3'
miRNA:   3'- -CGACGcCGuCGGCGUGca--CG--------------CGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 10180 0.67 0.305166
Target:  5'- -aUGgGGCAGUcgucgCGCAUGUGCcGCUCgGc -3'
miRNA:   3'- cgACgCCGUCG-----GCGUGCACG-CGAGgC- -5'
26339 3' -61.9 NC_005345.2 + 9772 0.67 0.304434
Target:  5'- gGCUcacGCGGCGGCCcgcugaucggccuGCAgcCGgcgGCGCUCgCGg -3'
miRNA:   3'- -CGA---CGCCGUCGG-------------CGU--GCa--CGCGAG-GC- -5'
26339 3' -61.9 NC_005345.2 + 2050 0.67 0.290787
Target:  5'- gGC-GCGGCccggcgGGCCGCgGCGaaaaUGCGCUCUu -3'
miRNA:   3'- -CGaCGCCG------UCGGCG-UGC----ACGCGAGGc -5'
26339 3' -61.9 NC_005345.2 + 19391 0.67 0.290787
Target:  5'- --gGCGGCGuGCCcaccCGCGggGUGCUCCGu -3'
miRNA:   3'- cgaCGCCGU-CGGc---GUGCa-CGCGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 11496 0.67 0.290787
Target:  5'- cGCUGCGGCGcggcGCCgGCugGUcgGCGUcgUCGa -3'
miRNA:   3'- -CGACGCCGU----CGG-CGugCA--CGCGa-GGC- -5'
26339 3' -61.9 NC_005345.2 + 10714 0.67 0.290787
Target:  5'- cCUGCGGCagcucgucGGCCGgAUGgccGCGCUCg- -3'
miRNA:   3'- cGACGCCG--------UCGGCgUGCa--CGCGAGgc -5'
26339 3' -61.9 NC_005345.2 + 24820 0.67 0.283799
Target:  5'- gGCUGCGaCAGCCacgcguccGaCGCGUGCGUgaUCUGa -3'
miRNA:   3'- -CGACGCcGUCGG--------C-GUGCACGCG--AGGC- -5'
26339 3' -61.9 NC_005345.2 + 14333 0.67 0.283799
Target:  5'- gGCgaGgGGCAGgCGCacgGCGUGCGCgaggaCCGc -3'
miRNA:   3'- -CGa-CgCCGUCgGCG---UGCACGCGa----GGC- -5'
26339 3' -61.9 NC_005345.2 + 36546 0.67 0.283799
Target:  5'- --cGCGGCc-CCGagcuCGUGCGCUUCGg -3'
miRNA:   3'- cgaCGCCGucGGCgu--GCACGCGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 11783 0.68 0.276945
Target:  5'- cGCgGCGGCGGcCCGCugGUcgGcCGUcgaUCCGc -3'
miRNA:   3'- -CGaCGCCGUC-GGCGugCA--C-GCG---AGGC- -5'
26339 3' -61.9 NC_005345.2 + 11455 0.68 0.276945
Target:  5'- aGCUGCucgcccgcaGGCGGCCGCGacCGggGCuGCUgCCGu -3'
miRNA:   3'- -CGACG---------CCGUCGGCGU--GCa-CG-CGA-GGC- -5'
26339 3' -61.9 NC_005345.2 + 11707 0.68 0.270223
Target:  5'- gGCUGCGGC-GCgGUGCGcucGCuCUCCGc -3'
miRNA:   3'- -CGACGCCGuCGgCGUGCa--CGcGAGGC- -5'
26339 3' -61.9 NC_005345.2 + 27150 0.68 0.263633
Target:  5'- aGCUGCccgaGGC-GCUGCGCG-GCGUcCCGc -3'
miRNA:   3'- -CGACG----CCGuCGGCGUGCaCGCGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.