miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26339 5' -57.4 NC_005345.2 + 466 0.68 0.434751
Target:  5'- cCGCGGGugcacGACCUucgcCACGUGUUCGcCACg -3'
miRNA:   3'- -GUGCCU-----CUGGGu---GUGCACGAGC-GUGa -5'
26339 5' -57.4 NC_005345.2 + 631 0.66 0.579118
Target:  5'- gGCGaGGACCCGUACGacCUCGCGCc -3'
miRNA:   3'- gUGCcUCUGGGUGUGCacGAGCGUGa -5'
26339 5' -57.4 NC_005345.2 + 4956 1.07 0.000704
Target:  5'- uCACGGAGACCCACACGUGCUCGCACUg -3'
miRNA:   3'- -GUGCCUCUGGGUGUGCACGAGCGUGA- -5'
26339 5' -57.4 NC_005345.2 + 7098 0.67 0.515127
Target:  5'- gACGGucgaaacGGCCCGCgACGUGUggcgcCGCGCg -3'
miRNA:   3'- gUGCCu------CUGGGUG-UGCACGa----GCGUGa -5'
26339 5' -57.4 NC_005345.2 + 7224 0.67 0.484198
Target:  5'- aGCGGGuccGACCCGucccgggcCACGUGCcccgcccgguUCGCGCg -3'
miRNA:   3'- gUGCCU---CUGGGU--------GUGCACG----------AGCGUGa -5'
26339 5' -57.4 NC_005345.2 + 9796 0.71 0.305836
Target:  5'- gCGCGGucgcGGCCCGCGCGgcgcgGCUCaCGCg -3'
miRNA:   3'- -GUGCCu---CUGGGUGUGCa----CGAGcGUGa -5'
26339 5' -57.4 NC_005345.2 + 13200 0.66 0.589979
Target:  5'- aGCGGcaGCCCGCGCG-GCgaGCACa -3'
miRNA:   3'- gUGCCucUGGGUGUGCaCGagCGUGa -5'
26339 5' -57.4 NC_005345.2 + 16044 0.7 0.357026
Target:  5'- gUACGGAcGACCUcggcgacgaucgcggGCAgCGUGCUCaGCACg -3'
miRNA:   3'- -GUGCCU-CUGGG---------------UGU-GCACGAG-CGUGa -5'
26339 5' -57.4 NC_005345.2 + 16338 0.66 0.579118
Target:  5'- gUACGGAGACCgGCcCGcagGCUggggGCGCUg -3'
miRNA:   3'- -GUGCCUCUGGgUGuGCa--CGAg---CGUGA- -5'
26339 5' -57.4 NC_005345.2 + 18286 0.72 0.237438
Target:  5'- -cCGGAGcACCCGCGCGcUGUucguccucgccgUCGCACUg -3'
miRNA:   3'- guGCCUC-UGGGUGUGC-ACG------------AGCGUGA- -5'
26339 5' -57.4 NC_005345.2 + 18925 0.66 0.546825
Target:  5'- uCGCGG---CCCGCACcUGCUCGC-CUg -3'
miRNA:   3'- -GUGCCucuGGGUGUGcACGAGCGuGA- -5'
26339 5' -57.4 NC_005345.2 + 19043 0.68 0.434751
Target:  5'- aGCGGcGACCCAUGCG-GCgaGCGCUu -3'
miRNA:   3'- gUGCCuCUGGGUGUGCaCGagCGUGA- -5'
26339 5' -57.4 NC_005345.2 + 19470 0.68 0.434751
Target:  5'- uCACGGAGcACCC-CGCGgGUggGCACg -3'
miRNA:   3'- -GUGCCUC-UGGGuGUGCaCGagCGUGa -5'
26339 5' -57.4 NC_005345.2 + 22135 0.69 0.406523
Target:  5'- gCGCGGugugccGGACCCAcCGCGgucgGCUCGUgaGCUc -3'
miRNA:   3'- -GUGCC------UCUGGGU-GUGCa---CGAGCG--UGA- -5'
26339 5' -57.4 NC_005345.2 + 27687 0.75 0.168142
Target:  5'- aGCGGAccGAUCuCGC-CGUGCUCGCGCg -3'
miRNA:   3'- gUGCCU--CUGG-GUGuGCACGAGCGUGa -5'
26339 5' -57.4 NC_005345.2 + 31456 0.69 0.370728
Target:  5'- uCGCcGAGGCCgGCGCG-GUUCGUACg -3'
miRNA:   3'- -GUGcCUCUGGgUGUGCaCGAGCGUGa -5'
26339 5' -57.4 NC_005345.2 + 32459 0.68 0.44441
Target:  5'- uCACGGAcGACCCGCAgGcGgUCGuCACc -3'
miRNA:   3'- -GUGCCU-CUGGGUGUgCaCgAGC-GUGa -5'
26339 5' -57.4 NC_005345.2 + 32786 0.67 0.494413
Target:  5'- aGCGGcGACgCCGCgGCGaUGCUCgGCGCg -3'
miRNA:   3'- gUGCCuCUG-GGUG-UGC-ACGAG-CGUGa -5'
26339 5' -57.4 NC_005345.2 + 37837 0.67 0.504724
Target:  5'- -cCGGGGGCCCugACuGUGCggUCGguCg -3'
miRNA:   3'- guGCCUCUGGGugUG-CACG--AGCguGa -5'
26339 5' -57.4 NC_005345.2 + 40680 0.7 0.362122
Target:  5'- uCGCGGAGAggUACAcccCGUGCUCGCcgGCUg -3'
miRNA:   3'- -GUGCCUCUggGUGU---GCACGAGCG--UGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.