Results 1 - 9 of 9 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 2634 | 5' | -43.7 | NC_001491.2 | + | 97017 | 0.66 | 1 |
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Target: 5'- gGGAGGgc-CGUgGGCUaccaggGAGCa -3' miRNA: 3'- aCCUCUaauGCAgUCGAaaaaa-CUCG- -5' |
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| 2634 | 5' | -43.7 | NC_001491.2 | + | 57484 | 0.66 | 1 |
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Target: 5'- aUGGGGAUaGCG-CAGCUa----GAGUg -3' miRNA: 3'- -ACCUCUAaUGCaGUCGAaaaaaCUCG- -5' |
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| 2634 | 5' | -43.7 | NC_001491.2 | + | 31138 | 0.66 | 1 |
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Target: 5'- cGGGGAgaGCGUUAGagaacg-GGGCg -3' miRNA: 3'- aCCUCUaaUGCAGUCgaaaaaaCUCG- -5' |
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| 2634 | 5' | -43.7 | NC_001491.2 | + | 84845 | 0.67 | 0.999999 |
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Target: 5'- aGGcGGUUACGUCAGCggcgguccuGCc -3' miRNA: 3'- aCCuCUAAUGCAGUCGaaaaaacu-CG- -5' |
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| 2634 | 5' | -43.7 | NC_001491.2 | + | 78102 | 0.67 | 0.999996 |
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Target: 5'- cUGGAGGg-GCGUCGGUUaaguauacGAGCa -3' miRNA: 3'- -ACCUCUaaUGCAGUCGAaaaaa---CUCG- -5' |
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| 2634 | 5' | -43.7 | NC_001491.2 | + | 88815 | 0.69 | 0.999947 |
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Target: 5'- aGGAGAaucUGCGgCGGCUaggaUGAGCu -3' miRNA: 3'- aCCUCUa--AUGCaGUCGAaaaaACUCG- -5' |
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| 2634 | 5' | -43.7 | NC_001491.2 | + | 2053 | 0.7 | 0.999874 |
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Target: 5'- gUGGAGAccGCGUCcAGCaccag-GAGCu -3' miRNA: 3'- -ACCUCUaaUGCAG-UCGaaaaaaCUCG- -5' |
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| 2634 | 5' | -43.7 | NC_001491.2 | + | 105141 | 0.7 | 0.999785 |
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Target: 5'- cGGGGGUcucUACGgcaGGCUUUgg-GGGCu -3' miRNA: 3'- aCCUCUA---AUGCag-UCGAAAaaaCUCG- -5' |
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| 2634 | 5' | -43.7 | NC_001491.2 | + | 142546 | 1.16 | 0.018544 |
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Target: 5'- gUGGAGAUUACGUCAGCUUUUUUGAGCg -3' miRNA: 3'- -ACCUCUAAUGCAGUCGAAAAAACUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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