miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2634 5' -43.7 NC_001491.2 + 97017 0.66 1
Target:  5'- gGGAGGgc-CGUgGGCUaccaggGAGCa -3'
miRNA:   3'- aCCUCUaauGCAgUCGAaaaaa-CUCG- -5'
2634 5' -43.7 NC_001491.2 + 57484 0.66 1
Target:  5'- aUGGGGAUaGCG-CAGCUa----GAGUg -3'
miRNA:   3'- -ACCUCUAaUGCaGUCGAaaaaaCUCG- -5'
2634 5' -43.7 NC_001491.2 + 31138 0.66 1
Target:  5'- cGGGGAgaGCGUUAGagaacg-GGGCg -3'
miRNA:   3'- aCCUCUaaUGCAGUCgaaaaaaCUCG- -5'
2634 5' -43.7 NC_001491.2 + 84845 0.67 0.999999
Target:  5'- aGGcGGUUACGUCAGCggcgguccuGCc -3'
miRNA:   3'- aCCuCUAAUGCAGUCGaaaaaacu-CG- -5'
2634 5' -43.7 NC_001491.2 + 78102 0.67 0.999996
Target:  5'- cUGGAGGg-GCGUCGGUUaaguauacGAGCa -3'
miRNA:   3'- -ACCUCUaaUGCAGUCGAaaaaa---CUCG- -5'
2634 5' -43.7 NC_001491.2 + 88815 0.69 0.999947
Target:  5'- aGGAGAaucUGCGgCGGCUaggaUGAGCu -3'
miRNA:   3'- aCCUCUa--AUGCaGUCGAaaaaACUCG- -5'
2634 5' -43.7 NC_001491.2 + 2053 0.7 0.999874
Target:  5'- gUGGAGAccGCGUCcAGCaccag-GAGCu -3'
miRNA:   3'- -ACCUCUaaUGCAG-UCGaaaaaaCUCG- -5'
2634 5' -43.7 NC_001491.2 + 105141 0.7 0.999785
Target:  5'- cGGGGGUcucUACGgcaGGCUUUgg-GGGCu -3'
miRNA:   3'- aCCUCUA---AUGCag-UCGAAAaaaCUCG- -5'
2634 5' -43.7 NC_001491.2 + 142546 1.16 0.018544
Target:  5'- gUGGAGAUUACGUCAGCUUUUUUGAGCg -3'
miRNA:   3'- -ACCUCUAAUGCAGUCGAAAAAACUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.