miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26341 3' -62.9 NC_005345.2 + 48242 0.65 0.349675
Target:  5'- gGCGagGCGCCGgcgaagcauccggaCGAACUgaUGCCGCCc -3'
miRNA:   3'- gCGCgaCGCGGC--------------GCUUGA--GCGGCGGc -5'
26341 3' -62.9 NC_005345.2 + 9705 0.66 0.344116
Target:  5'- aGCGg-GcCGCCGCguGAGCcgCGCCGCgCGg -3'
miRNA:   3'- gCGCgaC-GCGGCG--CUUGa-GCGGCG-GC- -5'
26341 3' -62.9 NC_005345.2 + 29250 0.66 0.344116
Target:  5'- cCGCGaUGCGCaGCG-GCUCGcCCGCa- -3'
miRNA:   3'- -GCGCgACGCGgCGCuUGAGC-GGCGgc -5'
26341 3' -62.9 NC_005345.2 + 30231 0.66 0.344116
Target:  5'- cCGaCGCga-GCCGCGAggacaugaucGCg-GCCGCCGa -3'
miRNA:   3'- -GC-GCGacgCGGCGCU----------UGagCGGCGGC- -5'
26341 3' -62.9 NC_005345.2 + 46026 0.66 0.344116
Target:  5'- uGUGCagugGCGCCucggcGCGAAguauggccggaUCGCCGCCa -3'
miRNA:   3'- gCGCGa---CGCGG-----CGCUUg----------AGCGGCGGc -5'
26341 3' -62.9 NC_005345.2 + 35436 0.66 0.344116
Target:  5'- gGCGUcgGgGUCccauGUGAACUCGCCGCa- -3'
miRNA:   3'- gCGCGa-CgCGG----CGCUUGAGCGGCGgc -5'
26341 3' -62.9 NC_005345.2 + 24622 0.66 0.34254
Target:  5'- gCGUGCUGCacgauccGCCGUgcgggccGggUUgGUCGCCGa -3'
miRNA:   3'- -GCGCGACG-------CGGCG-------CuuGAgCGGCGGC- -5'
26341 3' -62.9 NC_005345.2 + 7714 0.66 0.340968
Target:  5'- gGUGCUGCuGcCCGCuacgaagGAgauccgcaggugacACUCGUCGCCGu -3'
miRNA:   3'- gCGCGACG-C-GGCG-------CU--------------UGAGCGGCGGC- -5'
26341 3' -62.9 NC_005345.2 + 41048 0.66 0.336286
Target:  5'- --aGCUGCgGCCGCacuGCUCGCCGa-- -3'
miRNA:   3'- gcgCGACG-CGGCGcu-UGAGCGGCggc -5'
26341 3' -62.9 NC_005345.2 + 21233 0.66 0.336286
Target:  5'- cCGCGCUcggaaGCGacaC-CGAACgCGUCGCCGa -3'
miRNA:   3'- -GCGCGA-----CGCg--GcGCUUGaGCGGCGGC- -5'
26341 3' -62.9 NC_005345.2 + 47980 0.66 0.336286
Target:  5'- cCGUG-UGCGCCGCGcacgcucccCUCGCgGCgCGg -3'
miRNA:   3'- -GCGCgACGCGGCGCuu-------GAGCGgCG-GC- -5'
26341 3' -62.9 NC_005345.2 + 33302 0.66 0.336286
Target:  5'- gGCGacgaucagaacCUGCGCgGUGuAGCUCggGCCGUCGg -3'
miRNA:   3'- gCGC-----------GACGCGgCGC-UUGAG--CGGCGGC- -5'
26341 3' -62.9 NC_005345.2 + 45915 0.66 0.336286
Target:  5'- cCGCGUgcacagUGCGCUGCccGAACUgucCGCUGUCa -3'
miRNA:   3'- -GCGCG------ACGCGGCG--CUUGA---GCGGCGGc -5'
26341 3' -62.9 NC_005345.2 + 46658 0.66 0.33551
Target:  5'- gGCGCaGCGgCGUguacaucGAGCUCGCuCGCgCGc -3'
miRNA:   3'- gCGCGaCGCgGCG-------CUUGAGCG-GCG-GC- -5'
26341 3' -62.9 NC_005345.2 + 4970 0.66 0.333962
Target:  5'- aCGUGCUcGCaCUGCGAcCUCGgugggaggaacugaCCGCCGa -3'
miRNA:   3'- -GCGCGA-CGcGGCGCUuGAGC--------------GGCGGC- -5'
26341 3' -62.9 NC_005345.2 + 43701 0.66 0.330882
Target:  5'- cCGCG-UGgGCCGgccucgaccucgauaCGAACgccgucgUCGCCGCCGu -3'
miRNA:   3'- -GCGCgACgCGGC---------------GCUUG-------AGCGGCGGC- -5'
26341 3' -62.9 NC_005345.2 + 30186 0.66 0.328586
Target:  5'- aCGCGUgGCGCuCGUuc-CUCGCCGaCCa -3'
miRNA:   3'- -GCGCGaCGCG-GCGcuuGAGCGGC-GGc -5'
26341 3' -62.9 NC_005345.2 + 4887 0.66 0.328586
Target:  5'- gGCGC--CGCUGCGAgucgauGCUCGCCgaGCUGc -3'
miRNA:   3'- gCGCGacGCGGCGCU------UGAGCGG--CGGC- -5'
26341 3' -62.9 NC_005345.2 + 17847 0.66 0.328586
Target:  5'- cCGCGCagcaGCGCCcgGCGGGaaucCUCGggguCCGCCGu -3'
miRNA:   3'- -GCGCGa---CGCGG--CGCUU----GAGC----GGCGGC- -5'
26341 3' -62.9 NC_005345.2 + 18253 0.66 0.328586
Target:  5'- gGUGCUGC-UCGCcGGCcgCGCCGUCGc -3'
miRNA:   3'- gCGCGACGcGGCGcUUGa-GCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.