miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26341 3' -62.9 NC_005345.2 + 778 0.69 0.201564
Target:  5'- aGCGCaGCGCCGUcgcCUCGCC-CCa -3'
miRNA:   3'- gCGCGaCGCGGCGcuuGAGCGGcGGc -5'
26341 3' -62.9 NC_005345.2 + 1541 0.66 0.324029
Target:  5'- gGCGCgucgagccaaccggGCaCCGUGAggcgGCagUCGCCGCCGu -3'
miRNA:   3'- gCGCGa-------------CGcGGCGCU----UG--AGCGGCGGC- -5'
26341 3' -62.9 NC_005345.2 + 2474 0.68 0.228663
Target:  5'- aGUcCUGCGCgcgaGCGAGCUCGauguacaCGCCGc -3'
miRNA:   3'- gCGcGACGCGg---CGCUUGAGCg------GCGGC- -5'
26341 3' -62.9 NC_005345.2 + 2757 0.68 0.239148
Target:  5'- aGUGCcgccuucggacgGCGUgGCu-GCUCGCCGCCGc -3'
miRNA:   3'- gCGCGa-----------CGCGgCGcuUGAGCGGCGGC- -5'
26341 3' -62.9 NC_005345.2 + 2765 0.67 0.2991
Target:  5'- gCGCGCcacGCGCgGCGGccucgguacgGCUUGUcggCGCCGg -3'
miRNA:   3'- -GCGCGa--CGCGgCGCU----------UGAGCG---GCGGC- -5'
26341 3' -62.9 NC_005345.2 + 3148 0.71 0.151637
Target:  5'- cCGUGCcgacgGCGUCgGCGAGCUCGUCgggguGCCGg -3'
miRNA:   3'- -GCGCGa----CGCGG-CGCUUGAGCGG-----CGGC- -5'
26341 3' -62.9 NC_005345.2 + 3240 0.72 0.125992
Target:  5'- aGCGCacUGUGCaCGCGGcGCUCGgUGCCGa -3'
miRNA:   3'- gCGCG--ACGCG-GCGCU-UGAGCgGCGGC- -5'
26341 3' -62.9 NC_005345.2 + 3432 0.69 0.191529
Target:  5'- gGaCGCUGCGCaCGCaGACcccCGCcCGCCGg -3'
miRNA:   3'- gC-GCGACGCG-GCGcUUGa--GCG-GCGGC- -5'
26341 3' -62.9 NC_005345.2 + 3882 0.68 0.252506
Target:  5'- uGCGCUGCucuCCGcCGAcGCUCGCagugugggggugCGCCGu -3'
miRNA:   3'- gCGCGACGc--GGC-GCU-UGAGCG------------GCGGC- -5'
26341 3' -62.9 NC_005345.2 + 4270 0.72 0.125992
Target:  5'- aCGuUGCUGCGCCucGCGAcGCg-GCCGCCGc -3'
miRNA:   3'- -GC-GCGACGCGG--CGCU-UGagCGGCGGC- -5'
26341 3' -62.9 NC_005345.2 + 4775 0.67 0.265176
Target:  5'- uGgGCccGUGCCuuucCGGGCUCGCCGCgGg -3'
miRNA:   3'- gCgCGa-CGCGGc---GCUUGAGCGGCGgC- -5'
26341 3' -62.9 NC_005345.2 + 4875 0.68 0.223007
Target:  5'- aGUGCgacgaaGaUGCCGCGGgaauAUUCGCCGCUGa -3'
miRNA:   3'- gCGCGa-----C-GCGGCGCU----UGAGCGGCGGC- -5'
26341 3' -62.9 NC_005345.2 + 4887 0.66 0.328586
Target:  5'- gGCGC--CGCUGCGAgucgauGCUCGCCgaGCUGc -3'
miRNA:   3'- gCGCGacGCGGCGCU------UGAGCGG--CGGC- -5'
26341 3' -62.9 NC_005345.2 + 4956 0.76 0.06545
Target:  5'- aGUGCUGCGaugaaucCUGCGGugUCGCgGCCGa -3'
miRNA:   3'- gCGCGACGC-------GGCGCUugAGCGgCGGC- -5'
26341 3' -62.9 NC_005345.2 + 4970 0.66 0.333962
Target:  5'- aCGUGCUcGCaCUGCGAcCUCGgugggaggaacugaCCGCCGa -3'
miRNA:   3'- -GCGCGA-CGcGGCGCUuGAGC--------------GGCGGC- -5'
26341 3' -62.9 NC_005345.2 + 5145 0.68 0.234439
Target:  5'- aGCGCcgacaccGUGCacgaGCG-ACUCGUCGCCGc -3'
miRNA:   3'- gCGCGa------CGCGg---CGCuUGAGCGGCGGC- -5'
26341 3' -62.9 NC_005345.2 + 5157 0.69 0.217471
Target:  5'- aCGCGCcgcgGCgGCCGaCGAGuCgggcgaGCCGCCGg -3'
miRNA:   3'- -GCGCGa---CG-CGGC-GCUU-Gag----CGGCGGC- -5'
26341 3' -62.9 NC_005345.2 + 5278 0.75 0.07327
Target:  5'- aCGCGCUcCGCCGCGGAgUC-CCgGCCGa -3'
miRNA:   3'- -GCGCGAcGCGGCGCUUgAGcGG-CGGC- -5'
26341 3' -62.9 NC_005345.2 + 5335 0.76 0.062105
Target:  5'- aGCGCUGCagugcgguGCCGUGGGCgCGCUGCCc -3'
miRNA:   3'- gCGCGACG--------CGGCGCUUGaGCGGCGGc -5'
26341 3' -62.9 NC_005345.2 + 5595 0.77 0.051151
Target:  5'- uCGCGCUcGUGCCGUGGggcgccggGCUCGUgGCCGa -3'
miRNA:   3'- -GCGCGA-CGCGGCGCU--------UGAGCGgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.