miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26341 5' -55.3 NC_005345.2 + 23676 0.66 0.679428
Target:  5'- uCGCGGCcGGuCGGGCGGGC--CGAGCg- -3'
miRNA:   3'- -GUGUUG-UC-GCUCGCCCGcaGCUUGaa -5'
26341 5' -55.3 NC_005345.2 + 31033 0.66 0.668286
Target:  5'- gGCGcCGGCGAGUGcGGCGaCGAuCUUc -3'
miRNA:   3'- gUGUuGUCGCUCGC-CCGCaGCUuGAA- -5'
26341 5' -55.3 NC_005345.2 + 21847 0.66 0.668286
Target:  5'- gCGCGGCAuGCGuGCGGGC---GAGCUg -3'
miRNA:   3'- -GUGUUGU-CGCuCGCCCGcagCUUGAa -5'
26341 5' -55.3 NC_005345.2 + 31482 0.66 0.668286
Target:  5'- gGCG--GGCGAGCGcGGCGUaggcgcCGAGCa- -3'
miRNA:   3'- gUGUugUCGCUCGC-CCGCA------GCUUGaa -5'
26341 5' -55.3 NC_005345.2 + 29425 0.66 0.668286
Target:  5'- uCGCG--GGCGuuGCGGGCGUCGucCUc -3'
miRNA:   3'- -GUGUugUCGCu-CGCCCGCAGCuuGAa -5'
26341 5' -55.3 NC_005345.2 + 10604 0.66 0.657109
Target:  5'- gCACgAGCAGCG-GCGcGGCcggucggcccggGUCGAGCa- -3'
miRNA:   3'- -GUG-UUGUCGCuCGC-CCG------------CAGCUUGaa -5'
26341 5' -55.3 NC_005345.2 + 45702 0.66 0.657109
Target:  5'- gACAGguccCGGCGGGCGGGgGUCu-GCg- -3'
miRNA:   3'- gUGUU----GUCGCUCGCCCgCAGcuUGaa -5'
26341 5' -55.3 NC_005345.2 + 9175 0.66 0.657109
Target:  5'- gACu-CGGCGAGCGuGGCGagGAAUc- -3'
miRNA:   3'- gUGuuGUCGCUCGC-CCGCagCUUGaa -5'
26341 5' -55.3 NC_005345.2 + 21891 0.66 0.650391
Target:  5'- gACAGCAGCcGGUuccgccccucgcuccGGGCGUCGAc--- -3'
miRNA:   3'- gUGUUGUCGcUCG---------------CCCGCAGCUugaa -5'
26341 5' -55.3 NC_005345.2 + 35099 0.66 0.645908
Target:  5'- -uCGGCGGUGGuGCGGGCGUggCGggUg- -3'
miRNA:   3'- guGUUGUCGCU-CGCCCGCA--GCuuGaa -5'
26341 5' -55.3 NC_005345.2 + 33425 0.66 0.645908
Target:  5'- uCACAGCAGgGuGGCGGGCGgcccgcaaGGugUg -3'
miRNA:   3'- -GUGUUGUCgC-UCGCCCGCag------CUugAa -5'
26341 5' -55.3 NC_005345.2 + 46651 0.66 0.645908
Target:  5'- gCGgAACGGCGcAGCGGcGUGuacaUCGAGCUc -3'
miRNA:   3'- -GUgUUGUCGC-UCGCC-CGC----AGCUUGAa -5'
26341 5' -55.3 NC_005345.2 + 35257 0.66 0.642545
Target:  5'- gGCGGCAGUucggugaugguccgGAGCcGGCGgagCGAGCUg -3'
miRNA:   3'- gUGUUGUCG--------------CUCGcCCGCa--GCUUGAa -5'
26341 5' -55.3 NC_005345.2 + 23579 0.66 0.634694
Target:  5'- gGCAGCuGCGGGCGGccccgguaguaGCGccaccacucgUCGAGCUg -3'
miRNA:   3'- gUGUUGuCGCUCGCC-----------CGC----------AGCUUGAa -5'
26341 5' -55.3 NC_005345.2 + 3281 0.66 0.634694
Target:  5'- gCGCAGCuGCGuGCcguccacgucgaGGGCGUCGGcgaguGCUUc -3'
miRNA:   3'- -GUGUUGuCGCuCG------------CCCGCAGCU-----UGAA- -5'
26341 5' -55.3 NC_005345.2 + 30507 0.67 0.612268
Target:  5'- --gGACAGCGAcccGCGGGCGagGGuGCUg -3'
miRNA:   3'- gugUUGUCGCU---CGCCCGCagCU-UGAa -5'
26341 5' -55.3 NC_005345.2 + 41429 0.67 0.612268
Target:  5'- uGCAGCAGCGgcagcucguaccGGCGGcacucGCGgUCGAGCa- -3'
miRNA:   3'- gUGUUGUCGC------------UCGCC-----CGC-AGCUUGaa -5'
26341 5' -55.3 NC_005345.2 + 5162 0.67 0.612268
Target:  5'- cCGCGGCGGCcgacGAGuCGGGCGagccgcCGGGCUg -3'
miRNA:   3'- -GUGUUGUCG----CUC-GCCCGCa-----GCUUGAa -5'
26341 5' -55.3 NC_005345.2 + 8942 0.67 0.612268
Target:  5'- -cCGugGGCGGgcuGCGGGUGcUCGGGCUc -3'
miRNA:   3'- guGUugUCGCU---CGCCCGC-AGCUUGAa -5'
26341 5' -55.3 NC_005345.2 + 37256 0.67 0.612268
Target:  5'- gGCGACGGCG-GCGGucGCGUCGu---- -3'
miRNA:   3'- gUGUUGUCGCuCGCC--CGCAGCuugaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.