miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26342 3' -53.4 NC_005345.2 + 43300 0.66 0.812313
Target:  5'- cGGCgagGUCGACgcgccACAgccggaaccagcGGGCGAGCuGCu -3'
miRNA:   3'- aCCGag-CAGCUGa----UGU------------UCUGCUCG-CG- -5'
26342 3' -53.4 NC_005345.2 + 40640 0.66 0.812313
Target:  5'- cGGCcCGUCcACUGCcAGugGA-CGCc -3'
miRNA:   3'- aCCGaGCAGcUGAUGuUCugCUcGCG- -5'
26342 3' -53.4 NC_005345.2 + 4249 0.66 0.812313
Target:  5'- cGGCUCG--GGCUGCucGGCGAacaccggcgGUGCg -3'
miRNA:   3'- aCCGAGCagCUGAUGuuCUGCU---------CGCG- -5'
26342 3' -53.4 NC_005345.2 + 10722 0.66 0.812313
Target:  5'- -aGCUCGUCGGCc---GGAUGGccGCGCu -3'
miRNA:   3'- acCGAGCAGCUGauguUCUGCU--CGCG- -5'
26342 3' -53.4 NC_005345.2 + 9313 0.66 0.802671
Target:  5'- uUGaGUUCGUCGGCgacccggGCGGcGACcAGUGCg -3'
miRNA:   3'- -AC-CGAGCAGCUGa------UGUU-CUGcUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 10502 0.66 0.802671
Target:  5'- cGGCacccUCGACggGCAGGACGGGauCGCc -3'
miRNA:   3'- aCCGagc-AGCUGa-UGUUCUGCUC--GCG- -5'
26342 3' -53.4 NC_005345.2 + 39758 0.66 0.802671
Target:  5'- cGcGC-CGUCGACgacgGCGAGgaggagugGCGGGUGUg -3'
miRNA:   3'- aC-CGaGCAGCUGa---UGUUC--------UGCUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 45108 0.66 0.802671
Target:  5'- gGcGCUCGUCGGCgccgucgucGCAcagGGGCGGGacaaCGCg -3'
miRNA:   3'- aC-CGAGCAGCUGa--------UGU---UCUGCUC----GCG- -5'
26342 3' -53.4 NC_005345.2 + 26505 0.66 0.802671
Target:  5'- -cGCagGUCGACcccuUGCAcccGGcACGAGCGCc -3'
miRNA:   3'- acCGagCAGCUG----AUGU---UC-UGCUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 48073 0.66 0.802671
Target:  5'- gUGGCgUCucugCGACUugGAGuacauCGAGCuGCa -3'
miRNA:   3'- -ACCG-AGca--GCUGAugUUCu----GCUCG-CG- -5'
26342 3' -53.4 NC_005345.2 + 31865 0.66 0.802671
Target:  5'- cGGCgaaCGUgGGC-ACGGGuuCGGGUGCg -3'
miRNA:   3'- aCCGa--GCAgCUGaUGUUCu-GCUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 13415 0.66 0.802671
Target:  5'- -cGCUCGuUCGGCcGCcgcGGGCGAGCa- -3'
miRNA:   3'- acCGAGC-AGCUGaUGu--UCUGCUCGcg -5'
26342 3' -53.4 NC_005345.2 + 31268 0.66 0.802671
Target:  5'- gGGUgCG-CGGgUGCgGGGGCGGGUGCg -3'
miRNA:   3'- aCCGaGCaGCUgAUG-UUCUGCUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 39044 0.66 0.792843
Target:  5'- gGGCagUCGUCGcgcaugugccGCUcgGCccggauGACGAGCGCc -3'
miRNA:   3'- aCCG--AGCAGC----------UGA--UGuu----CUGCUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 10405 0.66 0.792843
Target:  5'- aGGUUCGcgUGACgcugUGCGAGGuCGcGCGCg -3'
miRNA:   3'- aCCGAGCa-GCUG----AUGUUCU-GCuCGCG- -5'
26342 3' -53.4 NC_005345.2 + 43913 0.66 0.792843
Target:  5'- cGGCgcgcagcgCGUCGGCgauCAGGccggccGCGAGCuGCc -3'
miRNA:   3'- aCCGa-------GCAGCUGau-GUUC------UGCUCG-CG- -5'
26342 3' -53.4 NC_005345.2 + 46861 0.66 0.792843
Target:  5'- aUGGUUaccccUGUgGAaacccCUGC-GGACGAGCGCa -3'
miRNA:   3'- -ACCGA-----GCAgCU-----GAUGuUCUGCUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 19570 0.66 0.782843
Target:  5'- -uGCUCGaccgacaccaUCGGCgcagugccggACGGGGCGAGCGg -3'
miRNA:   3'- acCGAGC----------AGCUGa---------UGUUCUGCUCGCg -5'
26342 3' -53.4 NC_005345.2 + 23319 0.66 0.782843
Target:  5'- cGGUccgCGUCGGgUGCGcgccGACGAGCa- -3'
miRNA:   3'- aCCGa--GCAGCUgAUGUu---CUGCUCGcg -5'
26342 3' -53.4 NC_005345.2 + 8965 0.66 0.782843
Target:  5'- gGGCUCGaccugUCG-CUcCGucGACGGGCGUg -3'
miRNA:   3'- aCCGAGC-----AGCuGAuGUu-CUGCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.