Results 1 - 20 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26342 | 3' | -53.4 | NC_005345.2 | + | 43300 | 0.66 | 0.812313 |
Target: 5'- cGGCgagGUCGACgcgccACAgccggaaccagcGGGCGAGCuGCu -3' miRNA: 3'- aCCGag-CAGCUGa----UGU------------UCUGCUCG-CG- -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 19570 | 0.66 | 0.782843 |
Target: 5'- -uGCUCGaccgacaccaUCGGCgcagugccggACGGGGCGAGCGg -3' miRNA: 3'- acCGAGC----------AGCUGa---------UGUUCUGCUCGCg -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 5603 | 0.66 | 0.772681 |
Target: 5'- cGaGCUUGUCGGCgACGagcucGGcgauccgcuccGCGAGCGCc -3' miRNA: 3'- aC-CGAGCAGCUGaUGU-----UC-----------UGCUCGCG- -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 36936 | 0.66 | 0.772681 |
Target: 5'- cGGCUCGggaggCGGCgGCcGGAC-AGCGg -3' miRNA: 3'- aCCGAGCa----GCUGaUGuUCUGcUCGCg -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 15329 | 0.66 | 0.772681 |
Target: 5'- cGGUgCGUCGGC--CGGGGCGuAGCGg -3' miRNA: 3'- aCCGaGCAGCUGauGUUCUGC-UCGCg -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 34869 | 0.66 | 0.782843 |
Target: 5'- -uGCUCGUCGucgcCUACcAGAaGAGCGa -3' miRNA: 3'- acCGAGCAGCu---GAUGuUCUgCUCGCg -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 44671 | 0.66 | 0.782843 |
Target: 5'- cGGCUCGUCGA--GCcGGACacGGcCGCc -3' miRNA: 3'- aCCGAGCAGCUgaUGuUCUGc-UC-GCG- -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 8965 | 0.66 | 0.782843 |
Target: 5'- gGGCUCGaccugUCG-CUcCGucGACGGGCGUg -3' miRNA: 3'- aCCGAGC-----AGCuGAuGUu-CUGCUCGCG- -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 10405 | 0.66 | 0.792843 |
Target: 5'- aGGUUCGcgUGACgcugUGCGAGGuCGcGCGCg -3' miRNA: 3'- aCCGAGCa-GCUG----AUGUUCU-GCuCGCG- -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 23319 | 0.66 | 0.782843 |
Target: 5'- cGGUccgCGUCGGgUGCGcgccGACGAGCa- -3' miRNA: 3'- aCCGa--GCAGCUgAUGUu---CUGCUCGcg -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 43913 | 0.66 | 0.792843 |
Target: 5'- cGGCgcgcagcgCGUCGGCgauCAGGccggccGCGAGCuGCc -3' miRNA: 3'- aCCGa-------GCAGCUGau-GUUC------UGCUCG-CG- -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 46861 | 0.66 | 0.792843 |
Target: 5'- aUGGUUaccccUGUgGAaacccCUGC-GGACGAGCGCa -3' miRNA: 3'- -ACCGA-----GCAgCU-----GAUGuUCUGCUCGCG- -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 40640 | 0.66 | 0.812313 |
Target: 5'- cGGCcCGUCcACUGCcAGugGA-CGCc -3' miRNA: 3'- aCCGaGCAGcUGAUGuUCugCUcGCG- -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 4249 | 0.66 | 0.812313 |
Target: 5'- cGGCUCG--GGCUGCucGGCGAacaccggcgGUGCg -3' miRNA: 3'- aCCGAGCagCUGAUGuuCUGCU---------CGCG- -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 26505 | 0.66 | 0.802671 |
Target: 5'- -cGCagGUCGACcccuUGCAcccGGcACGAGCGCc -3' miRNA: 3'- acCGagCAGCUG----AUGU---UC-UGCUCGCG- -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 31865 | 0.66 | 0.802671 |
Target: 5'- cGGCgaaCGUgGGC-ACGGGuuCGGGUGCg -3' miRNA: 3'- aCCGa--GCAgCUGaUGUUCu-GCUCGCG- -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 31268 | 0.66 | 0.802671 |
Target: 5'- gGGUgCG-CGGgUGCgGGGGCGGGUGCg -3' miRNA: 3'- aCCGaGCaGCUgAUG-UUCUGCUCGCG- -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 13415 | 0.66 | 0.802671 |
Target: 5'- -cGCUCGuUCGGCcGCcgcGGGCGAGCa- -3' miRNA: 3'- acCGAGC-AGCUGaUGu--UCUGCUCGcg -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 48073 | 0.66 | 0.802671 |
Target: 5'- gUGGCgUCucugCGACUugGAGuacauCGAGCuGCa -3' miRNA: 3'- -ACCG-AGca--GCUGAugUUCu----GCUCG-CG- -5' |
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26342 | 3' | -53.4 | NC_005345.2 | + | 39044 | 0.66 | 0.792843 |
Target: 5'- gGGCagUCGUCGcgcaugugccGCUcgGCccggauGACGAGCGCc -3' miRNA: 3'- aCCG--AGCAGC----------UGA--UGuu----CUGCUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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