miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26342 3' -53.4 NC_005345.2 + 19570 0.66 0.782843
Target:  5'- -uGCUCGaccgacaccaUCGGCgcagugccggACGGGGCGAGCGg -3'
miRNA:   3'- acCGAGC----------AGCUGa---------UGUUCUGCUCGCg -5'
26342 3' -53.4 NC_005345.2 + 23319 0.66 0.782843
Target:  5'- cGGUccgCGUCGGgUGCGcgccGACGAGCa- -3'
miRNA:   3'- aCCGa--GCAGCUgAUGUu---CUGCUCGcg -5'
26342 3' -53.4 NC_005345.2 + 5603 0.66 0.772681
Target:  5'- cGaGCUUGUCGGCgACGagcucGGcgauccgcuccGCGAGCGCc -3'
miRNA:   3'- aC-CGAGCAGCUGaUGU-----UC-----------UGCUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 36936 0.66 0.772681
Target:  5'- cGGCUCGggaggCGGCgGCcGGAC-AGCGg -3'
miRNA:   3'- aCCGAGCa----GCUGaUGuUCUGcUCGCg -5'
26342 3' -53.4 NC_005345.2 + 15329 0.66 0.772681
Target:  5'- cGGUgCGUCGGC--CGGGGCGuAGCGg -3'
miRNA:   3'- aCCGaGCAGCUGauGUUCUGC-UCGCg -5'
26342 3' -53.4 NC_005345.2 + 4687 0.67 0.762369
Target:  5'- cGGCUCGacgcccgugCGGCgaACAGGGCG-GCGa -3'
miRNA:   3'- aCCGAGCa--------GCUGa-UGUUCUGCuCGCg -5'
26342 3' -53.4 NC_005345.2 + 25243 0.67 0.762369
Target:  5'- cGGCUCGUCGGC-GCu---CGuGCGg -3'
miRNA:   3'- aCCGAGCAGCUGaUGuucuGCuCGCg -5'
26342 3' -53.4 NC_005345.2 + 31851 0.67 0.762369
Target:  5'- gGGUUCGcccgucCGGCcgACAAGACccGCGCg -3'
miRNA:   3'- aCCGAGCa-----GCUGa-UGUUCUGcuCGCG- -5'
26342 3' -53.4 NC_005345.2 + 3824 0.67 0.762369
Target:  5'- cGG-UCGUCcGCUGCGAGGuCGgcGGCGUg -3'
miRNA:   3'- aCCgAGCAGcUGAUGUUCU-GC--UCGCG- -5'
26342 3' -53.4 NC_005345.2 + 37577 0.67 0.759248
Target:  5'- aGGCgcccgUCGUCGAgCUGCcGGGCGAugaacuucgcggucGUGCu -3'
miRNA:   3'- aCCG-----AGCAGCU-GAUGuUCUGCU--------------CGCG- -5'
26342 3' -53.4 NC_005345.2 + 38291 0.67 0.751919
Target:  5'- gUGGCcCGUCGACUACuaccuCGccGGCGg -3'
miRNA:   3'- -ACCGaGCAGCUGAUGuucu-GC--UCGCg -5'
26342 3' -53.4 NC_005345.2 + 3793 0.67 0.751919
Target:  5'- gUGGCgaucaCGUCGACgggcagauCGAGGCc-GCGCa -3'
miRNA:   3'- -ACCGa----GCAGCUGau------GUUCUGcuCGCG- -5'
26342 3' -53.4 NC_005345.2 + 14285 0.67 0.751919
Target:  5'- cUGGUaggCGaCGACgaGCAGGgucACGAGCGCc -3'
miRNA:   3'- -ACCGa--GCaGCUGa-UGUUC---UGCUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 35692 0.67 0.751919
Target:  5'- gGGUUCGUCGgucugggcaaGCUGCcGGAC--GCGCc -3'
miRNA:   3'- aCCGAGCAGC----------UGAUGuUCUGcuCGCG- -5'
26342 3' -53.4 NC_005345.2 + 15311 0.67 0.748759
Target:  5'- aGGUUCGUcgcCGACUugGucaguGACGcgauguccuuacgcGGCGCg -3'
miRNA:   3'- aCCGAGCA---GCUGAugUu----CUGC--------------UCGCG- -5'
26342 3' -53.4 NC_005345.2 + 11618 0.67 0.741343
Target:  5'- cUGGCgggaGUgGGCggaGAG-CGAGCGCa -3'
miRNA:   3'- -ACCGag--CAgCUGaugUUCuGCUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 14847 0.67 0.741343
Target:  5'- -aGCUUGcCgGGCUGCA--GCGGGCGCu -3'
miRNA:   3'- acCGAGCaG-CUGAUGUucUGCUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 43861 0.67 0.741343
Target:  5'- cGGggCGUCGGC--CGGGACuccgcggcgGAGCGCg -3'
miRNA:   3'- aCCgaGCAGCUGauGUUCUG---------CUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 16829 0.67 0.741343
Target:  5'- cGGUUCGagcaggaccggcUCGugUACcGGGCGcagcugcaGGCGCg -3'
miRNA:   3'- aCCGAGC------------AGCugAUGuUCUGC--------UCGCG- -5'
26342 3' -53.4 NC_005345.2 + 11989 0.67 0.72419
Target:  5'- cGGCUCGcgauccggcaggaaCGACU-CGGGACGA-CGCu -3'
miRNA:   3'- aCCGAGCa-------------GCUGAuGUUCUGCUcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.