miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26342 3' -53.4 NC_005345.2 + 2791 0.75 0.314155
Target:  5'- cGGCUUGUCGGCgcc--GGCGuGCGCu -3'
miRNA:   3'- aCCGAGCAGCUGauguuCUGCuCGCG- -5'
26342 3' -53.4 NC_005345.2 + 3793 0.67 0.751919
Target:  5'- gUGGCgaucaCGUCGACgggcagauCGAGGCc-GCGCa -3'
miRNA:   3'- -ACCGa----GCAGCUGau------GUUCUGcuCGCG- -5'
26342 3' -53.4 NC_005345.2 + 3824 0.67 0.762369
Target:  5'- cGG-UCGUCcGCUGCGAGGuCGgcGGCGUg -3'
miRNA:   3'- aCCgAGCAGcUGAUGUUCU-GC--UCGCG- -5'
26342 3' -53.4 NC_005345.2 + 3971 0.68 0.669248
Target:  5'- cGGCauacUCGGCUGCGacgucaggcccggucGGACGAGcCGCa -3'
miRNA:   3'- aCCGagc-AGCUGAUGU---------------UCUGCUC-GCG- -5'
26342 3' -53.4 NC_005345.2 + 4249 0.66 0.812313
Target:  5'- cGGCUCG--GGCUGCucGGCGAacaccggcgGUGCg -3'
miRNA:   3'- aCCGAGCagCUGAUGuuCUGCU---------CGCG- -5'
26342 3' -53.4 NC_005345.2 + 4687 0.67 0.762369
Target:  5'- cGGCUCGacgcccgugCGGCgaACAGGGCG-GCGa -3'
miRNA:   3'- aCCGAGCa--------GCUGa-UGUUCUGCuCGCg -5'
26342 3' -53.4 NC_005345.2 + 5015 0.69 0.6201
Target:  5'- aGGCggCGgaccacUCGACgaACGucGACGAGCGCa -3'
miRNA:   3'- aCCGa-GC------AGCUGa-UGUu-CUGCUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 5279 0.68 0.686997
Target:  5'- gGGCUCGggggUCGgguACUGCGggGGGCGGGCcCa -3'
miRNA:   3'- aCCGAGC----AGC---UGAUGU--UCUGCUCGcG- -5'
26342 3' -53.4 NC_005345.2 + 5603 0.66 0.772681
Target:  5'- cGaGCUUGUCGGCgACGagcucGGcgauccgcuccGCGAGCGCc -3'
miRNA:   3'- aC-CGAGCAGCUGaUGU-----UC-----------UGCUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 5983 1.01 0.005493
Target:  5'- gUGGCU-GUCGACUACAAGACGAGCGCg -3'
miRNA:   3'- -ACCGAgCAGCUGAUGUUCUGCUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 6599 0.67 0.708981
Target:  5'- -uGCUCGUCGACU-CGugucGGACGA-UGCu -3'
miRNA:   3'- acCGAGCAGCUGAuGU----UCUGCUcGCG- -5'
26342 3' -53.4 NC_005345.2 + 7233 0.71 0.499784
Target:  5'- cGGUgUCGUCGGCgacgaccaggGCGAcGACGAGCaGCu -3'
miRNA:   3'- aCCG-AGCAGCUGa---------UGUU-CUGCUCG-CG- -5'
26342 3' -53.4 NC_005345.2 + 7514 0.68 0.686997
Target:  5'- gUGGCUCGcCGACccggggauCGAGAUccccgaGGGUGCg -3'
miRNA:   3'- -ACCGAGCaGCUGau------GUUCUG------CUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 8426 0.78 0.190733
Target:  5'- gGGCUgcccgggucgcUGUCGACgACGAGcACGGGCGCg -3'
miRNA:   3'- aCCGA-----------GCAGCUGaUGUUC-UGCUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 8559 0.7 0.531806
Target:  5'- cGuGCUCGcCGGCUGCGAucguccauGCGGGCGUc -3'
miRNA:   3'- aC-CGAGCaGCUGAUGUUc-------UGCUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 8761 0.71 0.489298
Target:  5'- -aGCaUCGgggaGGCUgcGCAGGAUGAGCGCg -3'
miRNA:   3'- acCG-AGCag--CUGA--UGUUCUGCUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 8831 0.71 0.510368
Target:  5'- gGGCUCGUcugccgCGGCUGCGGcACGgugaacgggGGCGCg -3'
miRNA:   3'- aCCGAGCA------GCUGAUGUUcUGC---------UCGCG- -5'
26342 3' -53.4 NC_005345.2 + 8965 0.66 0.782843
Target:  5'- gGGCUCGaccugUCG-CUcCGucGACGGGCGUg -3'
miRNA:   3'- aCCGAGC-----AGCuGAuGUu-CUGCUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 9313 0.66 0.802671
Target:  5'- uUGaGUUCGUCGGCgacccggGCGGcGACcAGUGCg -3'
miRNA:   3'- -AC-CGAGCAGCUGa------UGUU-CUGcUCGCG- -5'
26342 3' -53.4 NC_005345.2 + 10405 0.66 0.792843
Target:  5'- aGGUUCGcgUGACgcugUGCGAGGuCGcGCGCg -3'
miRNA:   3'- aCCGAGCa-GCUG----AUGUUCU-GCuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.