miRNA display CGI


Results 1 - 20 of 224 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26342 5' -54.2 NC_005345.2 + 32799 0.66 0.790634
Target:  5'- gCGGCGCCgGCCGcgaUGccgcCGACGAGCuuucGCu -3'
miRNA:   3'- -GCUGUGG-UGGC---ACau--GCUGCUCGu---CG- -5'
26342 5' -54.2 NC_005345.2 + 8118 0.66 0.790634
Target:  5'- cCGACccgGCCGCCGUcGU-CGACG-GCucuuGGCc -3'
miRNA:   3'- -GCUG---UGGUGGCA-CAuGCUGCuCG----UCG- -5'
26342 5' -54.2 NC_005345.2 + 15343 0.66 0.790634
Target:  5'- gGGCGuaGCgGgUGUGCGGCGAaguagGCGGCg -3'
miRNA:   3'- gCUGUggUGgC-ACAUGCUGCU-----CGUCG- -5'
26342 5' -54.2 NC_005345.2 + 38942 0.66 0.790634
Target:  5'- -cGCAUCAuCCGgugGUACGacGCGAGC-GCg -3'
miRNA:   3'- gcUGUGGU-GGCa--CAUGC--UGCUCGuCG- -5'
26342 5' -54.2 NC_005345.2 + 39649 0.66 0.790634
Target:  5'- gGACGCgcugaACCGcGUGCucgacuCGGGCGGCg -3'
miRNA:   3'- gCUGUGg----UGGCaCAUGcu----GCUCGUCG- -5'
26342 5' -54.2 NC_005345.2 + 4031 0.66 0.790634
Target:  5'- --cCGCC-CC-UGUGCGACGA-CGGCg -3'
miRNA:   3'- gcuGUGGuGGcACAUGCUGCUcGUCG- -5'
26342 5' -54.2 NC_005345.2 + 37033 0.66 0.790634
Target:  5'- gCGGCACCgggcgaGCCGggaucCGGCcGGCGGCg -3'
miRNA:   3'- -GCUGUGG------UGGCacau-GCUGcUCGUCG- -5'
26342 5' -54.2 NC_005345.2 + 47711 0.66 0.786687
Target:  5'- aCGACgACC-CCGUGccgucggacugggACGACGAGgGGa -3'
miRNA:   3'- -GCUG-UGGuGGCACa------------UGCUGCUCgUCg -5'
26342 5' -54.2 NC_005345.2 + 25354 0.66 0.780718
Target:  5'- uGuCGCCGCCGUcc-UGGCGuGGCAGUg -3'
miRNA:   3'- gCuGUGGUGGCAcauGCUGC-UCGUCG- -5'
26342 5' -54.2 NC_005345.2 + 27190 0.66 0.780718
Target:  5'- uCGGCGCgGgCCGUGaucgGCaGCGGGuCGGCg -3'
miRNA:   3'- -GCUGUGgU-GGCACa---UGcUGCUC-GUCG- -5'
26342 5' -54.2 NC_005345.2 + 25504 0.66 0.780718
Target:  5'- uCGGCGCCGuCCGccu-CGGCGAacaccaugcGCAGCc -3'
miRNA:   3'- -GCUGUGGU-GGCacauGCUGCU---------CGUCG- -5'
26342 5' -54.2 NC_005345.2 + 7019 0.66 0.779718
Target:  5'- uCGACGCCgggucgccggucgACCGgccgGCGAuCGAgGCGGCc -3'
miRNA:   3'- -GCUGUGG-------------UGGCaca-UGCU-GCU-CGUCG- -5'
26342 5' -54.2 NC_005345.2 + 8180 0.66 0.777713
Target:  5'- uGACACCgaACCGgcaaucCGgaugaucgaccugaACGAGCAGCg -3'
miRNA:   3'- gCUGUGG--UGGCacau--GC--------------UGCUCGUCG- -5'
26342 5' -54.2 NC_005345.2 + 23427 0.66 0.777713
Target:  5'- gCGACGCCcgggugucggguucGCCGUccggaccgGUcACGccgagcGCGAGCAGCc -3'
miRNA:   3'- -GCUGUGG--------------UGGCA--------CA-UGC------UGCUCGUCG- -5'
26342 5' -54.2 NC_005345.2 + 22846 0.66 0.770648
Target:  5'- uCGA-ACUGCCcgaggGUGUcgACGACGAGCGGg -3'
miRNA:   3'- -GCUgUGGUGG-----CACA--UGCUGCUCGUCg -5'
26342 5' -54.2 NC_005345.2 + 13730 0.66 0.770648
Target:  5'- cCGACGCCgaACCGgacgACGACGAcaucgaGGCa -3'
miRNA:   3'- -GCUGUGG--UGGCaca-UGCUGCUcg----UCG- -5'
26342 5' -54.2 NC_005345.2 + 30114 0.66 0.770648
Target:  5'- cCGAC-CC-CCGUaccgACGGCucGGGCGGCg -3'
miRNA:   3'- -GCUGuGGuGGCAca--UGCUG--CUCGUCG- -5'
26342 5' -54.2 NC_005345.2 + 47158 0.66 0.770648
Target:  5'- --uCACCcuguuCCGUGgucucacCGAgGAGCAGCa -3'
miRNA:   3'- gcuGUGGu----GGCACau-----GCUgCUCGUCG- -5'
26342 5' -54.2 NC_005345.2 + 2836 0.66 0.770648
Target:  5'- gCGAgGCCGacaGcGUGCGcuCGGGCGGCg -3'
miRNA:   3'- -GCUgUGGUgg-CaCAUGCu-GCUCGUCG- -5'
26342 5' -54.2 NC_005345.2 + 41012 0.66 0.770648
Target:  5'- gGGCGCagcggccaagaGCCGUcgACGACG-GCGGCc -3'
miRNA:   3'- gCUGUGg----------UGGCAcaUGCUGCuCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.