miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26344 3' -62.1 NC_005345.2 + 8591 0.66 0.329953
Target:  5'- aCGGUcgAGGCGGCCCGuccACUgccagUGGaCGCc- -3'
miRNA:   3'- -GCCG--UCCGCCGGGU---UGA-----ACCgGCGua -5'
26344 3' -62.1 NC_005345.2 + 6831 0.66 0.329953
Target:  5'- uGGCGGGCGGgaUCGACaUGGUccuCGCGg -3'
miRNA:   3'- gCCGUCCGCCg-GGUUGaACCG---GCGUa -5'
26344 3' -62.1 NC_005345.2 + 31488 0.66 0.325256
Target:  5'- gCGGaucGGCGGCCCcgcgaacacggucguGACcgaccGGCCGCGUc -3'
miRNA:   3'- -GCCgu-CCGCCGGG---------------UUGaa---CCGGCGUA- -5'
26344 3' -62.1 NC_005345.2 + 38671 0.66 0.322152
Target:  5'- cCGGC-GGUGGCCgAGgUaaucccGGCCGCGa -3'
miRNA:   3'- -GCCGuCCGCCGGgUUgAa-----CCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 12857 0.66 0.322152
Target:  5'- cCGGUgacgucguggGGGUGGCUCGccGCcgggUGGCCGCu- -3'
miRNA:   3'- -GCCG----------UCCGCCGGGU--UGa---ACCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 30691 0.66 0.314491
Target:  5'- uCGGCguccgGGGCGGUCUGAUcgggcGGCUGCAg -3'
miRNA:   3'- -GCCG-----UCCGCCGGGUUGaa---CCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 1196 0.66 0.314491
Target:  5'- cCGGaa-GCGGUCgAACUgGGCCGCGc -3'
miRNA:   3'- -GCCgucCGCCGGgUUGAaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 33041 0.66 0.314491
Target:  5'- uCGcGCAGGuCGGCCuCGACUgccucGCCGUg- -3'
miRNA:   3'- -GC-CGUCC-GCCGG-GUUGAac---CGGCGua -5'
26344 3' -62.1 NC_005345.2 + 16217 0.66 0.314491
Target:  5'- gGGguGGCGGgggcgucgacgaUCgGGCUcGGCCGCGg -3'
miRNA:   3'- gCCguCCGCC------------GGgUUGAaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 5440 0.66 0.306968
Target:  5'- uCGGC-GGC-GCCCGGgUcGGCCGUAg -3'
miRNA:   3'- -GCCGuCCGcCGGGUUgAaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 15066 0.66 0.306968
Target:  5'- gCGGC-GGCGGCCCcgaggagUGGCC-CGg -3'
miRNA:   3'- -GCCGuCCGCCGGGuuga---ACCGGcGUa -5'
26344 3' -62.1 NC_005345.2 + 6486 0.66 0.299583
Target:  5'- aCGGC-GGCGaGCCCGagGCguggacGCCGCAg -3'
miRNA:   3'- -GCCGuCCGC-CGGGU--UGaac---CGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 39834 0.66 0.299583
Target:  5'- uCGGCAucGCgGGCUCGGCc-GGCCGCAc -3'
miRNA:   3'- -GCCGUc-CG-CCGGGUUGaaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 47858 0.66 0.296668
Target:  5'- aGGUGGGCaugGGCCCGGCgacggugacgucGGCCGgCGUg -3'
miRNA:   3'- gCCGUCCG---CCGGGUUGaa----------CCGGC-GUA- -5'
26344 3' -62.1 NC_005345.2 + 6063 0.66 0.292337
Target:  5'- aCGGCGGGCu-CCCGAg-UGGCUGCu- -3'
miRNA:   3'- -GCCGUCCGccGGGUUgaACCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 14667 0.66 0.292337
Target:  5'- cCGGcCGGGCGGCgucgCCGAUgccgGGCCGg-- -3'
miRNA:   3'- -GCC-GUCCGCCG----GGUUGaa--CCGGCgua -5'
26344 3' -62.1 NC_005345.2 + 24468 0.66 0.289477
Target:  5'- uCGGCGucucgaugaugcuGCcGCCgAGCUUGGCCGCGUu -3'
miRNA:   3'- -GCCGUc------------CGcCGGgUUGAACCGGCGUA- -5'
26344 3' -62.1 NC_005345.2 + 18195 0.66 0.285228
Target:  5'- uCGGCgAGGCGcGCgCCGAgUgggGcGCCGCGUu -3'
miRNA:   3'- -GCCG-UCCGC-CG-GGUUgAa--C-CGGCGUA- -5'
26344 3' -62.1 NC_005345.2 + 28411 0.66 0.285228
Target:  5'- gCGGCAGGCagGGCggaucggucgCCGAg--GGCCGCGa -3'
miRNA:   3'- -GCCGUCCG--CCG----------GGUUgaaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 7360 0.66 0.285228
Target:  5'- gCGGUGGcGCaGCCgGGCgggggUGGCCGCu- -3'
miRNA:   3'- -GCCGUC-CGcCGGgUUGa----ACCGGCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.