Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26344 | 3' | -62.1 | NC_005345.2 | + | 8591 | 0.66 | 0.329953 |
Target: 5'- aCGGUcgAGGCGGCCCGuccACUgccagUGGaCGCc- -3' miRNA: 3'- -GCCG--UCCGCCGGGU---UGA-----ACCgGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 12857 | 0.66 | 0.322152 |
Target: 5'- cCGGUgacgucguggGGGUGGCUCGccGCcgggUGGCCGCu- -3' miRNA: 3'- -GCCG----------UCCGCCGGGU--UGa---ACCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 31488 | 0.66 | 0.325256 |
Target: 5'- gCGGaucGGCGGCCCcgcgaacacggucguGACcgaccGGCCGCGUc -3' miRNA: 3'- -GCCgu-CCGCCGGG---------------UUGaa---CCGGCGUA- -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 6831 | 0.66 | 0.329953 |
Target: 5'- uGGCGGGCGGgaUCGACaUGGUccuCGCGg -3' miRNA: 3'- gCCGUCCGCCg-GGUUGaACCG---GCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 14667 | 0.66 | 0.292337 |
Target: 5'- cCGGcCGGGCGGCgucgCCGAUgccgGGCCGg-- -3' miRNA: 3'- -GCC-GUCCGCCG----GGUUGaa--CCGGCgua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 28411 | 0.66 | 0.285228 |
Target: 5'- gCGGCAGGCagGGCggaucggucgCCGAg--GGCCGCGa -3' miRNA: 3'- -GCCGUCCG--CCG----------GGUUgaaCCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 47858 | 0.66 | 0.296668 |
Target: 5'- aGGUGGGCaugGGCCCGGCgacggugacgucGGCCGgCGUg -3' miRNA: 3'- gCCGUCCG---CCGGGUUGaa----------CCGGC-GUA- -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 5440 | 0.66 | 0.306968 |
Target: 5'- uCGGC-GGC-GCCCGGgUcGGCCGUAg -3' miRNA: 3'- -GCCGuCCGcCGGGUUgAaCCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 6063 | 0.66 | 0.292337 |
Target: 5'- aCGGCGGGCu-CCCGAg-UGGCUGCu- -3' miRNA: 3'- -GCCGUCCGccGGGUUgaACCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 6486 | 0.66 | 0.299583 |
Target: 5'- aCGGC-GGCGaGCCCGagGCguggacGCCGCAg -3' miRNA: 3'- -GCCGuCCGC-CGGGU--UGaac---CGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 18195 | 0.66 | 0.285228 |
Target: 5'- uCGGCgAGGCGcGCgCCGAgUgggGcGCCGCGUu -3' miRNA: 3'- -GCCG-UCCGC-CG-GGUUgAa--C-CGGCGUA- -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 38671 | 0.66 | 0.322152 |
Target: 5'- cCGGC-GGUGGCCgAGgUaaucccGGCCGCGa -3' miRNA: 3'- -GCCGuCCGCCGGgUUgAa-----CCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 1196 | 0.66 | 0.314491 |
Target: 5'- cCGGaa-GCGGUCgAACUgGGCCGCGc -3' miRNA: 3'- -GCCgucCGCCGGgUUGAaCCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 30691 | 0.66 | 0.314491 |
Target: 5'- uCGGCguccgGGGCGGUCUGAUcgggcGGCUGCAg -3' miRNA: 3'- -GCCG-----UCCGCCGGGUUGaa---CCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 16217 | 0.66 | 0.314491 |
Target: 5'- gGGguGGCGGgggcgucgacgaUCgGGCUcGGCCGCGg -3' miRNA: 3'- gCCguCCGCC------------GGgUUGAaCCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 33041 | 0.66 | 0.314491 |
Target: 5'- uCGcGCAGGuCGGCCuCGACUgccucGCCGUg- -3' miRNA: 3'- -GC-CGUCC-GCCGG-GUUGAac---CGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 15066 | 0.66 | 0.306968 |
Target: 5'- gCGGC-GGCGGCCCcgaggagUGGCC-CGg -3' miRNA: 3'- -GCCGuCCGCCGGGuuga---ACCGGcGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 24468 | 0.66 | 0.289477 |
Target: 5'- uCGGCGucucgaugaugcuGCcGCCgAGCUUGGCCGCGUu -3' miRNA: 3'- -GCCGUc------------CGcCGGgUUGAACCGGCGUA- -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 39834 | 0.66 | 0.299583 |
Target: 5'- uCGGCAucGCgGGCUCGGCc-GGCCGCAc -3' miRNA: 3'- -GCCGUc-CG-CCGGGUUGaaCCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 7360 | 0.66 | 0.285228 |
Target: 5'- gCGGUGGcGCaGCCgGGCgggggUGGCCGCu- -3' miRNA: 3'- -GCCGUC-CGcCGGgUUGa----ACCGGCGua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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