Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26344 | 3' | -62.1 | NC_005345.2 | + | 6340 | 1.05 | 0.000321 |
Target: 5'- gCGGCAGGCGGCCCAACUUGGCCGCAUc -3' miRNA: 3'- -GCCGUCCGCCGGGUUGAACCGGCGUA- -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 32518 | 0.81 | 0.021708 |
Target: 5'- cCGGCGGGCGGCCCGAuCUgcgcggguccgGGCCGCc- -3' miRNA: 3'- -GCCGUCCGCCGGGUU-GAa----------CCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 42872 | 0.77 | 0.044664 |
Target: 5'- aCGGCAcGaGCGGCgCCGGgUUGGCCGCGg -3' miRNA: 3'- -GCCGU-C-CGCCG-GGUUgAACCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 8684 | 0.77 | 0.051094 |
Target: 5'- gCGGCgguggccgugacguGGGCGGCCCGGCUgUGGCCGa-- -3' miRNA: 3'- -GCCG--------------UCCGCCGGGUUGA-ACCGGCgua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 2044 | 0.76 | 0.061142 |
Target: 5'- gGGCccGGcGCGGCCCGGCg-GGCCGCGg -3' miRNA: 3'- gCCG--UC-CGCCGGGUUGaaCCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 44758 | 0.75 | 0.072471 |
Target: 5'- cCGGCGGG-GGCCCGGC--GGCCGUGUc -3' miRNA: 3'- -GCCGUCCgCCGGGUUGaaCCGGCGUA- -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 11444 | 0.74 | 0.08824 |
Target: 5'- -cGCAGGCGGCCgCGACcggGGCUGCu- -3' miRNA: 3'- gcCGUCCGCCGG-GUUGaa-CCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 11782 | 0.73 | 0.104304 |
Target: 5'- gCGGC-GGCGGCCCG-CUggucGGCCGUc- -3' miRNA: 3'- -GCCGuCCGCCGGGUuGAa---CCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 31192 | 0.72 | 0.12309 |
Target: 5'- cCGGCAGGCGGCCgAGCcggacGCCGgAc -3' miRNA: 3'- -GCCGUCCGCCGGgUUGaac--CGGCgUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 11491 | 0.72 | 0.12309 |
Target: 5'- cCGcGCAGGCGGCCCGcaccgacgccggACUgcaGCCGCu- -3' miRNA: 3'- -GC-CGUCCGCCGGGU------------UGAac-CGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 41278 | 0.71 | 0.130021 |
Target: 5'- cCGGCGGGUGGgUguGCUggGGCCGCc- -3' miRNA: 3'- -GCCGUCCGCCgGguUGAa-CCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 10798 | 0.71 | 0.144976 |
Target: 5'- gCGGCAGGCGGaCCGGCUcgauUGGUgccUGCGg -3' miRNA: 3'- -GCCGUCCGCCgGGUUGA----ACCG---GCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 9774 | 0.7 | 0.161486 |
Target: 5'- gCGGCucacgcGGCGGCCCG-CUgaucGGCCuGCAg -3' miRNA: 3'- -GCCGu-----CCGCCGGGUuGAa---CCGG-CGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 43123 | 0.7 | 0.161486 |
Target: 5'- cCGGaCcGGUGGCCCAACggccGGCCGgAg -3' miRNA: 3'- -GCC-GuCCGCCGGGUUGaa--CCGGCgUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 33422 | 0.69 | 0.179671 |
Target: 5'- cCGGUguGGGCGGCacgCCGGCUacGCCGCGa -3' miRNA: 3'- -GCCG--UCCGCCG---GGUUGAacCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 23654 | 0.69 | 0.189428 |
Target: 5'- aGGCGGaCGGCgCCGACcagGGUCGCGg -3' miRNA: 3'- gCCGUCcGCCG-GGUUGaa-CCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 36835 | 0.69 | 0.189428 |
Target: 5'- cCGGCGGuGCaGGCCgGACccUGGCgGCAc -3' miRNA: 3'- -GCCGUC-CG-CCGGgUUGa-ACCGgCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 14815 | 0.69 | 0.192952 |
Target: 5'- gCGGCGGGCGcggguguggucgacGCCCGagcaGCUUgccgGGCUGCAg -3' miRNA: 3'- -GCCGUCCGC--------------CGGGU----UGAA----CCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 8079 | 0.69 | 0.19448 |
Target: 5'- cCGaGCAGGCGGCCg-----GGCUGCAa -3' miRNA: 3'- -GC-CGUCCGCCGGguugaaCCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 7045 | 0.69 | 0.19448 |
Target: 5'- cCGGCgaucgAGGCGGCCCGGCc-GGacuaCGCGg -3' miRNA: 3'- -GCCG-----UCCGCCGGGUUGaaCCg---GCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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