miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26344 3' -62.1 NC_005345.2 + 1196 0.66 0.314491
Target:  5'- cCGGaa-GCGGUCgAACUgGGCCGCGc -3'
miRNA:   3'- -GCCgucCGCCGGgUUGAaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 2044 0.76 0.061142
Target:  5'- gGGCccGGcGCGGCCCGGCg-GGCCGCGg -3'
miRNA:   3'- gCCG--UC-CGCCGGGUUGaaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 3075 0.67 0.251726
Target:  5'- aGGCcccGGCGGCCCc----GGCCGCc- -3'
miRNA:   3'- gCCGu--CCGCCGGGuugaaCCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 3649 0.68 0.233222
Target:  5'- gGGCGGGcCGGUUgCGGCcgggGGCCGCGa -3'
miRNA:   3'- gCCGUCC-GCCGG-GUUGaa--CCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 4173 0.67 0.271421
Target:  5'- gCGGCAGGC-GCUC-ACggGGCgGCAg -3'
miRNA:   3'- -GCCGUCCGcCGGGuUGaaCCGgCGUa -5'
26344 3' -62.1 NC_005345.2 + 4199 0.67 0.278256
Target:  5'- cCGuGCAGGCGGCgCGGCagauGCUGCGg -3'
miRNA:   3'- -GC-CGUCCGCCGgGUUGaac-CGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 5440 0.66 0.306968
Target:  5'- uCGGC-GGC-GCCCGGgUcGGCCGUAg -3'
miRNA:   3'- -GCCGuCCGcCGGGUUgAaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 6063 0.66 0.292337
Target:  5'- aCGGCGGGCu-CCCGAg-UGGCUGCu- -3'
miRNA:   3'- -GCCGUCCGccGGGUUgaACCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 6340 1.05 0.000321
Target:  5'- gCGGCAGGCGGCCCAACUUGGCCGCAUc -3'
miRNA:   3'- -GCCGUCCGCCGGGUUGAACCGGCGUA- -5'
26344 3' -62.1 NC_005345.2 + 6486 0.66 0.299583
Target:  5'- aCGGC-GGCGaGCCCGagGCguggacGCCGCAg -3'
miRNA:   3'- -GCCGuCCGC-CGGGU--UGaac---CGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 6831 0.66 0.329953
Target:  5'- uGGCGGGCGGgaUCGACaUGGUccuCGCGg -3'
miRNA:   3'- gCCGUCCGCCg-GGUUGaACCG---GCGUa -5'
26344 3' -62.1 NC_005345.2 + 7045 0.69 0.19448
Target:  5'- cCGGCgaucgAGGCGGCCCGGCc-GGacuaCGCGg -3'
miRNA:   3'- -GCCG-----UCCGCCGGGUUGaaCCg---GCGUa -5'
26344 3' -62.1 NC_005345.2 + 7360 0.66 0.285228
Target:  5'- gCGGUGGcGCaGCCgGGCgggggUGGCCGCu- -3'
miRNA:   3'- -GCCGUC-CGcCGGgUUGa----ACCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 8079 0.69 0.19448
Target:  5'- cCGaGCAGGCGGCCg-----GGCUGCAa -3'
miRNA:   3'- -GC-CGUCCGCCGGguugaaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 8591 0.66 0.329953
Target:  5'- aCGGUcgAGGCGGCCCGuccACUgccagUGGaCGCc- -3'
miRNA:   3'- -GCCG--UCCGCCGGGU---UGA-----ACCgGCGua -5'
26344 3' -62.1 NC_005345.2 + 8684 0.77 0.051094
Target:  5'- gCGGCgguggccgugacguGGGCGGCCCGGCUgUGGCCGa-- -3'
miRNA:   3'- -GCCG--------------UCCGCCGGGUUGA-ACCGGCgua -5'
26344 3' -62.1 NC_005345.2 + 9146 0.68 0.23926
Target:  5'- cCGGCGacGGCGGCCCGGauaaaGUCGCGg -3'
miRNA:   3'- -GCCGU--CCGCCGGGUUgaac-CGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 9774 0.7 0.161486
Target:  5'- gCGGCucacgcGGCGGCCCG-CUgaucGGCCuGCAg -3'
miRNA:   3'- -GCCGu-----CCGCCGGGUuGAa---CCGG-CGUa -5'
26344 3' -62.1 NC_005345.2 + 10039 0.67 0.264722
Target:  5'- aGGCGGacccGCaGCCCGAacccgGGCCGCGg -3'
miRNA:   3'- gCCGUC----CGcCGGGUUgaa--CCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 10717 0.68 0.23926
Target:  5'- gCGGCAGcucguCGGCCgGA--UGGCCGCGc -3'
miRNA:   3'- -GCCGUCc----GCCGGgUUgaACCGGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.