Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26344 | 3' | -62.1 | NC_005345.2 | + | 10798 | 0.71 | 0.144976 |
Target: 5'- gCGGCAGGCGGaCCGGCUcgauUGGUgccUGCGg -3' miRNA: 3'- -GCCGUCCGCCgGGUUGA----ACCG---GCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 11444 | 0.74 | 0.08824 |
Target: 5'- -cGCAGGCGGCCgCGACcggGGCUGCu- -3' miRNA: 3'- gcCGUCCGCCGG-GUUGaa-CCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 11491 | 0.72 | 0.12309 |
Target: 5'- cCGcGCAGGCGGCCCGcaccgacgccggACUgcaGCCGCu- -3' miRNA: 3'- -GC-CGUCCGCCGGGU------------UGAac-CGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 11782 | 0.73 | 0.104304 |
Target: 5'- gCGGC-GGCGGCCCG-CUggucGGCCGUc- -3' miRNA: 3'- -GCCGuCCGCCGGGUuGAa---CCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 12559 | 0.68 | 0.225566 |
Target: 5'- uGGCAGGUGGCaUCGugacuguccucuucGCUguugcGGCCGCGa -3' miRNA: 3'- gCCGUCCGCCG-GGU--------------UGAa----CCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 12857 | 0.66 | 0.322152 |
Target: 5'- cCGGUgacgucguggGGGUGGCUCGccGCcgggUGGCCGCu- -3' miRNA: 3'- -GCCG----------UCCGCCGGGU--UGa---ACCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 13376 | 0.67 | 0.258157 |
Target: 5'- gCGGCGGGUGGCUCggUUcgGGCgGgGg -3' miRNA: 3'- -GCCGUCCGCCGGGuuGAa-CCGgCgUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 13938 | 0.67 | 0.271421 |
Target: 5'- cCGGCGGaGCGaGCUguACUUGuCCGCGa -3' miRNA: 3'- -GCCGUC-CGC-CGGguUGAACcGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 14667 | 0.66 | 0.292337 |
Target: 5'- cCGGcCGGGCGGCgucgCCGAUgccgGGCCGg-- -3' miRNA: 3'- -GCC-GUCCGCCG----GGUUGaa--CCGGCgua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 14815 | 0.69 | 0.192952 |
Target: 5'- gCGGCGGGCGcggguguggucgacGCCCGagcaGCUUgccgGGCUGCAg -3' miRNA: 3'- -GCCGUCCGC--------------CGGGU----UGAA----CCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 14924 | 0.68 | 0.221532 |
Target: 5'- gCGGCGcGGCGGCUgCAGCgggcGGCgGCGa -3' miRNA: 3'- -GCCGU-CCGCCGG-GUUGaa--CCGgCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 15066 | 0.66 | 0.306968 |
Target: 5'- gCGGC-GGCGGCCCcgaggagUGGCC-CGg -3' miRNA: 3'- -GCCGuCCGCCGGGuuga---ACCGGcGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 15785 | 0.67 | 0.258157 |
Target: 5'- uGGCGGGCGGCCC-GCaaGGUgugucaccaccUGCGg -3' miRNA: 3'- gCCGUCCGCCGGGuUGaaCCG-----------GCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 16217 | 0.66 | 0.314491 |
Target: 5'- gGGguGGCGGgggcgucgacgaUCgGGCUcGGCCGCGg -3' miRNA: 3'- gCCguCCGCC------------GGgUUGAaCCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 18195 | 0.66 | 0.285228 |
Target: 5'- uCGGCgAGGCGcGCgCCGAgUgggGcGCCGCGUu -3' miRNA: 3'- -GCCG-UCCGC-CG-GGUUgAa--C-CGGCGUA- -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 18851 | 0.68 | 0.23926 |
Target: 5'- gGGCAGGCGaGCagguGCg-GGCCGCGa -3' miRNA: 3'- gCCGUCCGC-CGggu-UGaaCCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 19014 | 0.67 | 0.278256 |
Target: 5'- aCGGguGGCGcgccGCCCucg--GGCCGCu- -3' miRNA: 3'- -GCCguCCGC----CGGGuugaaCCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 19099 | 0.68 | 0.233222 |
Target: 5'- aGGCGGagcaGCGGCCCGAg--GGCgGCGc -3' miRNA: 3'- gCCGUC----CGCCGGGUUgaaCCGgCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 23654 | 0.69 | 0.189428 |
Target: 5'- aGGCGGaCGGCgCCGACcagGGUCGCGg -3' miRNA: 3'- gCCGUCcGCCG-GGUUGaa-CCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 24468 | 0.66 | 0.289477 |
Target: 5'- uCGGCGucucgaugaugcuGCcGCCgAGCUUGGCCGCGUu -3' miRNA: 3'- -GCCGUc------------CGcCGGgUUGAACCGGCGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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