Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26344 | 3' | -62.1 | NC_005345.2 | + | 25538 | 0.67 | 0.278256 |
Target: 5'- gCGGCAGGgGcaGCUCGACgagUGGUgGCGc -3' miRNA: 3'- -GCCGUCCgC--CGGGUUGa--ACCGgCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 28411 | 0.66 | 0.285228 |
Target: 5'- gCGGCAGGCagGGCggaucggucgCCGAg--GGCCGCGa -3' miRNA: 3'- -GCCGUCCG--CCG----------GGUUgaaCCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 30691 | 0.66 | 0.314491 |
Target: 5'- uCGGCguccgGGGCGGUCUGAUcgggcGGCUGCAg -3' miRNA: 3'- -GCCG-----UCCGCCGGGUUGaa---CCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 31192 | 0.72 | 0.12309 |
Target: 5'- cCGGCAGGCGGCCgAGCcggacGCCGgAc -3' miRNA: 3'- -GCCGUCCGCCGGgUUGaac--CGGCgUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 31488 | 0.66 | 0.325256 |
Target: 5'- gCGGaucGGCGGCCCcgcgaacacggucguGACcgaccGGCCGCGUc -3' miRNA: 3'- -GCCgu-CCGCCGGG---------------UUGaa---CCGGCGUA- -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 32069 | 0.67 | 0.278256 |
Target: 5'- uGGUcgGGGCGGUcgugCCGACgggGGCgGCGUa -3' miRNA: 3'- gCCG--UCCGCCG----GGUUGaa-CCGgCGUA- -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 32518 | 0.81 | 0.021708 |
Target: 5'- cCGGCGGGCGGCCCGAuCUgcgcggguccgGGCCGCc- -3' miRNA: 3'- -GCCGUCCGCCGGGUU-GAa----------CCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 32607 | 0.67 | 0.264722 |
Target: 5'- aGaCGGGCGGCCCGgacccGCgcagaucgGGCCGCc- -3' miRNA: 3'- gCcGUCCGCCGGGU-----UGaa------CCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 33041 | 0.66 | 0.314491 |
Target: 5'- uCGcGCAGGuCGGCCuCGACUgccucGCCGUg- -3' miRNA: 3'- -GC-CGUCC-GCCGG-GUUGAac---CGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 33422 | 0.69 | 0.179671 |
Target: 5'- cCGGUguGGGCGGCacgCCGGCUacGCCGCGa -3' miRNA: 3'- -GCCG--UCCGCCG---GGUUGAacCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 36209 | 0.67 | 0.251726 |
Target: 5'- uCGGC-GGCcccugaGGaCCCGccgaagagcgACUUGGCCGCGUc -3' miRNA: 3'- -GCCGuCCG------CC-GGGU----------UGAACCGGCGUA- -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 36835 | 0.69 | 0.189428 |
Target: 5'- cCGGCGGuGCaGGCCgGACccUGGCgGCAc -3' miRNA: 3'- -GCCGUC-CG-CCGGgUUGa-ACCGgCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 36945 | 0.68 | 0.215877 |
Target: 5'- aGGC-GGCGGCCgGACagcggcagacGGCCGCu- -3' miRNA: 3'- gCCGuCCGCCGGgUUGaa--------CCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 37868 | 0.68 | 0.233222 |
Target: 5'- cCGGCgAGGCucaGGCCCGGac-GGUCGCGg -3' miRNA: 3'- -GCCG-UCCG---CCGGGUUgaaCCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 38671 | 0.66 | 0.322152 |
Target: 5'- cCGGC-GGUGGCCgAGgUaaucccGGCCGCGa -3' miRNA: 3'- -GCCGuCCGCCGGgUUgAa-----CCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 39239 | 0.68 | 0.215877 |
Target: 5'- uGGCGGGuCGGCCCGGacgGGaagCGCAc -3' miRNA: 3'- gCCGUCC-GCCGGGUUgaaCCg--GCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 39834 | 0.66 | 0.299583 |
Target: 5'- uCGGCAucGCgGGCUCGGCc-GGCCGCAc -3' miRNA: 3'- -GCCGUc-CG-CCGGGUUGaaCCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 40830 | 0.67 | 0.258157 |
Target: 5'- gCGGCcGGCGGCCgAAC--GGuCCGCc- -3' miRNA: 3'- -GCCGuCCGCCGGgUUGaaCC-GGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 41278 | 0.71 | 0.130021 |
Target: 5'- cCGGCGGGUGGgUguGCUggGGCCGCc- -3' miRNA: 3'- -GCCGUCCGCCgGguUGAa-CCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 42872 | 0.77 | 0.044664 |
Target: 5'- aCGGCAcGaGCGGCgCCGGgUUGGCCGCGg -3' miRNA: 3'- -GCCGU-C-CGCCG-GGUUgAACCGGCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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